View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19002_low_2 (Length: 579)
Name: NF19002_low_2
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19002_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 12 - 531
Target Start/End: Complemental strand, 51890664 - 51890145
Alignment:
| Q |
12 |
tcatcacagtgactacaaaattcgaccattagtcctttgtaataaaaataaataaatcagaacctaagcttttgtgtgatttgaattgaacttttaccaa |
111 |
Q |
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| T |
51890664 |
tcatcacagtgattacaaaattcgaccattagtcctttgtaataaaaataaacaaatcagaacctaagcttttgtgtgatttgaattgaacttttaccaa |
51890565 |
T |
|
| Q |
112 |
acggatcaacctaatttgttaagacatttcannnnnnngtgtgcgtgtgttaatatcccgttctcaaggaaaacgagctctgataatttagagttcggtc |
211 |
Q |
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|| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51890564 |
acagatcaacctaatttgttaaaacatttcatttttttgtgtgcgtgtgttaatctcccgttctcaaggaaaacgagctctgataatttagagttcggtc |
51890465 |
T |
|
| Q |
212 |
ggaagacaagtaaagtcagatcaagataaattaacatctaattctcttaaacaattcgtcattagtagaactcgctaacaacttgagatcaatttatttg |
311 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
51890464 |
ggaagataagtaaagtcagatcaagataaattaacatctaattctcttaaacaattcgtcattagtagaactcgttaacaacttgagatcaatttctttg |
51890365 |
T |
|
| Q |
312 |
ttcaagacatttcactttgattccattcgaaatgtcccccgatattgtgtttatggagagaattgtggcccttttaactaaacaagttgatgttttttcg |
411 |
Q |
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| T |
51890364 |
ttcaagacatttcactttgattccattcaaaatgtcccccgatattgtgtttgtggagagaattgtggcccttttaactaaacaagttgatgttttttcg |
51890265 |
T |
|
| Q |
412 |
gtcataagtacataatttattaattcttcaatataatttgcgagtttcaattatcaattttgtcgatatttctcctcttatcattaatttttcaagtgcc |
511 |
Q |
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| T |
51890264 |
gtcataagtacatattttattaattcttcaatatgatttgcgagtttcaattatcaattttgtcgatatttctcctcttatcattaattttttaagtgcc |
51890165 |
T |
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| Q |
512 |
aaatggaaaaattaataatt |
531 |
Q |
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|||||||||||||||||||| |
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| T |
51890164 |
aaatggaaaaattaataatt |
51890145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 6984696 - 6984743
Alignment:
| Q |
253 |
ttctcttaaacaattcgtcattagtagaactcgctaacaacttgagat |
300 |
Q |
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|||||||||||||||||||||| || ||||||| |||| ||||||||| |
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| T |
6984696 |
ttctcttaaacaattcgtcattggtggaactcgttaaccacttgagat |
6984743 |
T |
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