View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19002_low_23 (Length: 240)
Name: NF19002_low_23
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19002_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 302791 - 302669
Alignment:
| Q |
112 |
aattctaacgggtaacacataaatgacctaatcgtttataatgaaaaatgttaataaacaagttggcaaagtaaagcgagggagcaaagacacaactgtc |
211 |
Q |
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| T |
302791 |
aattctaacgggtaacacataaatgacctaatcgtttagaatgaaaaatgttaataaacaagttggcaaagtaaagcgagggagcaaagacacaacagtc |
302692 |
T |
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| Q |
212 |
tctgttacaagcaaggtatacat |
234 |
Q |
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| T |
302691 |
tctgttacaagcaaggtatacat |
302669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 302939 - 302820
Alignment:
| Q |
1 |
catcaaagagatcaatctaacgtgtgactttaagaagaatcatacttcaatatcccacacgaaatgagttttataatttattatttattatgtacaccta |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
302939 |
catcaaagagatcaatcgaacgtgtgactttaagaagaatcatactccaatattccacatcaaatgagttttataatttattatttattgtgtacaccta |
302840 |
T |
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| Q |
101 |
aattataggcaaattctaac |
120 |
Q |
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|||||||||||||||||||| |
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| T |
302839 |
aattataggcaaattctaac |
302820 |
T |
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