View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19002_low_3 (Length: 525)
Name: NF19002_low_3
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19002_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 208 - 515
Target Start/End: Complemental strand, 40761718 - 40761411
Alignment:
| Q |
208 |
aaggaagaacaagatcctgctgttacacaagaggtgtagtagttgaaggagtagtaactcaacaaggttgcatctttgtatgatatctttcagaatatat |
307 |
Q |
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| T |
40761718 |
aaggaagaacaagatcctgctgttacacaagaggtgtagtagttgaaggagtagtaactcaacaaggttgcatctttgtatgatatctttcagaatatat |
40761619 |
T |
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| Q |
308 |
ggatgatttgccttaaacatatcccacattttgattgggtggttggttctggtggaattatatcatttgggagggttatcctgcaattatgctatcacat |
407 |
Q |
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| T |
40761618 |
ggttgatttgccttaaacatatcccacattttgattgggtggttggttctggtggaattatatcatttgggagggttatcctgcaattatgctatcacat |
40761519 |
T |
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| Q |
408 |
atttcattcattaatttgttaatgaacaaacattagatgatgataaataagttatgttctttgggggcatgttatgtagtagatgtgttttagaagccaa |
507 |
Q |
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| T |
40761518 |
atttcattcattaatttgttaatgaacaaacattagatgatgataaataagttatgttctttgggggcatgttatgtagtagatgtgttttagaagccaa |
40761419 |
T |
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| Q |
508 |
agtctgtg |
515 |
Q |
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| T |
40761418 |
agtctgtg |
40761411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 40761913 - 40761739
Alignment:
| Q |
1 |
tttctcagcccttcatcctatgctgctcttgatggattcatctactgcaaaccccacttttctcagctgtttaaggcaaaaggtagctatagttatctct |
100 |
Q |
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| T |
40761913 |
tttctcagcccttcatcctatgctgctcttgatggattcatctactgcaaaccacacttttctcagttgtttaaggcaaaaggtagctatagttatctct |
40761814 |
T |
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| Q |
101 |
ctaaacaagcttcaataaagaaaaatgaagaaatgcaacaagctgcagcagagaaaactgaatcagcaccagcat |
175 |
Q |
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| T |
40761813 |
ctaaacaagcttcaataaagaaaaatgaagaaatgcaacaagctgcagcagagaaaactgaatcagcaccagcat |
40761739 |
T |
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