View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19002_low_4 (Length: 513)

Name: NF19002_low_4
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19002_low_4
NF19002_low_4
[»] chr2 (10 HSPs)
chr2 (18-513)||(26377584-26378086)
chr2 (49-103)||(33391760-33391814)
chr2 (49-103)||(25438599-25438653)
chr2 (49-103)||(44673471-44673525)
chr2 (21-58)||(25438556-25438593)
chr2 (21-58)||(44673428-44673465)
chr2 (49-103)||(21005776-21005830)
chr2 (21-59)||(36536186-36536224)
chr2 (24-58)||(37154651-37154685)
chr2 (49-103)||(39573914-39573968)
[»] scaffold1211 (3 HSPs)
scaffold1211 (108-215)||(1297-1398)
scaffold1211 (403-506)||(1592-1695)
scaffold1211 (278-352)||(1484-1558)
[»] chr8 (14 HSPs)
chr8 (49-103)||(29168253-29168307)
chr8 (21-58)||(3376135-3376172)
chr8 (21-58)||(29168313-29168350)
chr8 (49-103)||(1548447-1548501)
chr8 (49-103)||(3118013-3118067)
chr8 (49-103)||(3277755-3277809)
chr8 (21-58)||(1548404-1548441)
chr8 (21-58)||(23033642-23033679)
chr8 (21-61)||(1469166-1469206)
chr8 (49-103)||(15660542-15660596)
chr8 (49-103)||(23033685-23033739)
chr8 (53-103)||(34784244-34784294)
chr8 (21-58)||(3117970-3118007)
chr8 (21-58)||(34784304-34784341)
[»] chr5 (4 HSPs)
chr5 (49-104)||(28277014-28277069)
chr5 (21-58)||(7992193-7992230)
chr5 (49-103)||(7992133-7992187)
chr5 (49-103)||(28828254-28828308)
[»] scaffold0325 (1 HSPs)
scaffold0325 (49-103)||(8650-8704)
[»] chr7 (7 HSPs)
chr7 (49-103)||(11599456-11599510)
chr7 (21-58)||(12859031-12859068)
chr7 (21-58)||(19886832-19886869)
chr7 (21-58)||(32775431-32775468)
chr7 (49-103)||(12858971-12859025)
chr7 (49-103)||(32775474-32775528)
chr7 (21-58)||(36167534-36167571)
[»] chr4 (12 HSPs)
chr4 (49-103)||(5650486-5650540)
chr4 (49-105)||(2588234-2588290)
chr4 (49-103)||(16497455-16497509)
chr4 (49-103)||(49577307-49577361)
chr4 (21-58)||(2588296-2588333)
chr4 (21-58)||(4289884-4289921)
chr4 (21-58)||(16497515-16497552)
chr4 (23-58)||(5650546-5650581)
chr4 (49-103)||(11157135-11157189)
chr4 (49-103)||(39598854-39598908)
chr4 (21-58)||(39598914-39598951)
chr4 (21-58)||(49577367-49577404)
[»] chr1 (4 HSPs)
chr1 (21-59)||(47523934-47523972)
chr1 (49-103)||(47523977-47524031)
chr1 (18-58)||(33966892-33966932)
chr1 (14-58)||(43866448-43866492)
[»] chr3 (11 HSPs)
chr3 (48-103)||(9454925-9454980)
chr3 (49-103)||(50064174-50064228)
chr3 (49-103)||(53208431-53208485)
chr3 (21-58)||(7323103-7323140)
chr3 (21-58)||(32130423-32130460)
chr3 (49-106)||(32130466-32130523)
chr3 (21-52)||(9454883-9454914)
chr3 (49-103)||(7227382-7227436)
chr3 (49-103)||(7323146-7323200)
chr3 (21-58)||(53208491-53208528)
chr3 (18-46)||(50064128-50064156)
[»] chr6 (5 HSPs)
chr6 (49-103)||(13425444-13425498)
chr6 (53-103)||(25100781-25100831)
chr6 (21-58)||(13425504-13425541)
chr6 (21-58)||(18133708-18133745)
chr6 (21-58)||(23889848-23889885)
[»] scaffold0604 (1 HSPs)
scaffold0604 (49-104)||(453-508)


Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 26377584 - 26378086
Alignment:
Q  18 aataacctaccgatcctacttacgaaccgtgttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacatcagcgcaagtatga 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  26377584 aataacctacctatcctacttacgaaccgtgttacgttccttcaccggccgaccgatcctatgtacgatctcgatcctgactacatcagggcaagtatga 26377683  T
Q  118 gccatactcaacactagagattcaaaccaatgttaagctgtcatcctagagc-------cttgagcttgtaagctgaatggctttaataactattagtgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  26377684 gccatactcaacactagagattcaaaccaatgttaagctgtcatcctagagccttgagccttgagcttgtaagctgaatggctttaataactattagtgt 26377783  T
Q  211 cctaatcgtggtttccaggtcagagaacagtaaatgataagtttgtagatgcaaaccacataatattttctaattcagatttgaagtcatcatagaagaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377784 cctaatcgtggtttccaggtcagagaacagtaaatgataagtttgtagatgcaaaccacataatattttctaattcagatttgaagtcatcatagaagaa 26377883  T
Q  311 tggttgagtaacttcagtttatatttcttcacaatttggttaacaaaataaataacagaaacaaatattttgcaccaagtgtggagccttgaaacatttt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377884 tggttgagtaacttcagtttatatttcttcacaatttggttaacaaaataaataacagaaacaaatattttgcaccaagtgtggagccttgaaacatttt 26377983  T
Q  411 atggttgatgataggggaagtgctgaataatgcaaaccatattcattcttcctttagcatgtagtcatgcaccatctgctattgcaatggaaagaaatga 510  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377984 atggttgatgataggggaagtgctgaataatgcaaaccgtatgcattcttcctttagcatgtagtcatgcaccatctgctattgcaatggaaagaaatga 26378083  T
Q  511 aac 513  Q
    |||    
T  26378084 aac 26378086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 33391814 - 33391760
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    ||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||    
T  33391814 ttacgttccatcaccggccgaccaatcctatgtaggatcttgatcctgactacat 33391760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 25438599 - 25438653
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  25438599 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 25438653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 44673471 - 44673525
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  44673471 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 44673525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 25438556 - 25438593
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  25438556 aacctatcgatcctacttacgaaccgtgttacgttcct 25438593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 44673428 - 44673465
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  44673428 aacctatcgatcctacttacgaaccgtgttacgttcct 44673465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 21005830 - 21005776
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||| |||||||||||||||||| |||| |||| | |||| ||||||||||||    
T  21005830 ttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacat 21005776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 36536224 - 36536186
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcctt 59  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  36536224 aacctaccgatcctacttacaaaccgtgttacgtgcctt 36536186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 37154685 - 37154651
Alignment:
Q  24 ctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||| ||||||||||||||||||||||||||||||    
T  37154685 ctactgatcctacttacgaaccgtgttacgttcct 37154651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 39573968 - 39573914
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||| |||||||||||||||||| |||| |||| | |||| ||||||||||||    
T  39573968 ttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacat 39573914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1211 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: scaffold1211
Description:

Target: scaffold1211; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 1297 - 1398
Alignment:
Q  108 gcaagtatgagccatactcaacactagagattcaaaccaatgttaagctgtcatcctagagccttgagcttgtaagctgaatggctttaata-actatta 206  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||| | |||||    
T  1297 gcaagtatgagccatactcaaaactagagattcaatccaatgttaagctgtcatccta-------gagcttgtaagctgaatggctttaatataatatta 1389  T
Q  207 gtgtcctaa 215  Q
    |||||||||    
T  1390 gtgtcctaa 1398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1211; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 403 - 506
Target Start/End: Original strand, 1592 - 1695
Alignment:
Q  403 aacattttatggttgatgataggggaagtgctgaataatgcaaaccatattcattcttcctttagcatgtagtcatgcaccatctgctattgcaatggaa 502  Q
    ||||||| || |||||||||||| ||| |  ||||||||||||| |||||   |||| ||||||||||||||||||| |||||||||||||| |||||||    
T  1592 aacatttgatagttgatgataggagaattattgaataatgcaaatcatatgggttctgcctttagcatgtagtcatgtaccatctgctattgaaatggaa 1691  T
Q  503 agaa 506  Q
    ||||    
T  1692 agaa 1695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1211; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 352
Target Start/End: Original strand, 1484 - 1558
Alignment:
Q  278 ttctaattcagatttgaagtcatcatagaagaatggttgagtaacttcagtttatatttcttcacaatttggtta 352  Q
    |||||||||||||||||||| || || ||| | |||| |||||||||||||||||||||||||||||||||||||    
T  1484 ttctaattcagatttgaagttattatggaatagtggtcgagtaacttcagtttatatttcttcacaatttggtta 1558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 29168307 - 29168253
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||||||||||    
T  29168307 ttacgttctttcaccggccgaccgatcctatgtaggatctctatcctgactacat 29168253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 3376172 - 3376135
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3376172 aacctaccgatcctacttacgaaccgtgttacgttcct 3376135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 29168350 - 29168313
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29168350 aacctaccgatcctacttacgaaccgtgttacgttcct 29168313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 1548447 - 1548501
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  1548447 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 1548501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 3118013 - 3118067
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| | ||||||||||||| |||| ||||||||||||    
T  3118013 ttacgttctttcaccggccgaccaatcctatgtaggaactcgttcctgactacat 3118067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 3277755 - 3277809
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  3277755 ttacgttctttcaccggccgaccgatcctaagtaggaactcgttcctgactacat 3277809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 1548404 - 1548441
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  1548404 aacctatcgatcctacttacgaaccgtgttacgttcct 1548441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 23033642 - 23033679
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  23033642 aacctatcgatcctacttacgaaccgtgttacgttcct 23033679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 1469166 - 1469206
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttccttca 61  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  1469166 aacctaccgatcctacttacggaccgtgtttcgttccttca 1469206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 15660542 - 15660596
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||| |||||||||||| ||||| ||||||||| | |||| ||||||||||||    
T  15660542 ttacgtcccttcaccggccaatcgaacctatgtagaaactcgttcctgactacat 15660596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 23033685 - 23033739
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| ||| |||| |||||| |||| ||||||||||||    
T  23033685 ttacgttctttcaccggccgaccgaacctacgtaggaactcgttcctgactacat 23033739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 34784294 - 34784244
Alignment:
Q  53 gttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  34784294 gttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 34784244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 3117970 - 3118007
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  3117970 aacctatcgatcctacttacgaaccatgttacgttcct 3118007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 34784341 - 34784304
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  34784341 aacctaacgatcctacttacaaaccgtgttacgttcct 34784304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 28277014 - 28277069
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacatc 104  Q
    |||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||    
T  28277014 ttacgttctttcaccggccaatcgatcctacgtaggatctcaatcctgactacatc 28277069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 7992230 - 7992193
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7992230 aacctatcgatcctacttacgaaccgtgttacgttcct 7992193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 7992187 - 7992133
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| |||||| |||| || |||||||||    
T  7992187 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcatgactacat 7992133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 28828254 - 28828308
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||| |||||||||||||||||| |||| |||| | |||| ||||||||||||    
T  28828254 ttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacat 28828308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 8650 - 8704
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| |||||||||| |||||||||||||    
T  8650 ttacgttcgttcaccggccgaccgatcctacgtaggatctccatcctgactacat 8704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 11599510 - 11599456
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    ||||||||||||| ||||||| ||| |||| ||||||||||||||||||||||||    
T  11599510 ttacgttccttcatcggccgaccgaacctacgtaggatctcgatcctgactacat 11599456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 12859068 - 12859031
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  12859068 aacctatcgatcctacttacgaaccgtgttacgttcct 12859031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 19886832 - 19886869
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  19886832 aacctatcgatcctacttacgaaccgtgttacgttcct 19886869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 32775431 - 32775468
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  32775431 aacctatcgatcctacttacgaaccgtgttacgttcct 32775468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 12859025 - 12858971
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||| ||| |||||| |||| ||||||||||||    
T  12859025 ttacgttctttcaccggccgaccgatgctacgtaggaactcgttcctgactacat 12858971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 32775474 - 32775528
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| | |||| |||| ||||||||||||    
T  32775474 ttacgttctttcaccggccgaccgatcctacgcaggaactcgttcctgactacat 32775528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 36167571 - 36167534
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| | |||||||||||||||||||||||||||||    
T  36167571 aacctatcaatcctacttacgaaccgtgttacgttcct 36167534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 5650540 - 5650486
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||    
T  5650540 ttacgttctttcaccggccgaccgatcctatgtaggaactcgttcctgactacat 5650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 2588290 - 2588234
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacatca 105  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||||    
T  2588290 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatca 2588234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 16497509 - 16497455
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  16497509 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 16497455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 49577361 - 49577307
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||| ||| |||||||||||| |||||||| |||||||||||||| |||||||||    
T  49577361 ttacattctttcaccggccgaccgatcctacgtaggatctcgatcatgactacat 49577307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 2588333 - 2588296
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  2588333 aacctatcgatcctacttacgaaccgtgttacgttcct 2588296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 4289921 - 4289884
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||||||||||||||||||||||| |||||||||||    
T  4289921 aacctaccgatcctacttacgaaccgggttacgttcct 4289884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 16497552 - 16497515
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  16497552 aacctatcgatcctacttacgaaccgtgttacgttcct 16497515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 5650581 - 5650546
Alignment:
Q  23 cctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||| |||||||||||||||||||||||||||||||    
T  5650581 cctatcgatcctacttacgaaccgtgttacgttcct 5650546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 11157135 - 11157189
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||| |||||||||||||||||| |||| |||| | |||| ||||||||||||    
T  11157135 ttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacat 11157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 39598908 - 39598854
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| ||||| | |||| ||||||||  |||||||||||||||||||||||    
T  39598908 ttacgttctttcactgcccgaccgatcctacataggatctcgatcctgactacat 39598854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 39598951 - 39598914
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  39598951 aacctaccgatcctacttacgaacagtgctacgttcct 39598914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 49577404 - 49577367
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  49577404 aacctaccgatcctacttatgaactgtgttacgttcct 49577367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 47523934 - 47523972
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcctt 59  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47523934 aacctaccgatcctacttacgaaccgtgttacgttcctt 47523972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 47523977 - 47524031
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| ||||||||  |||||||||||||||||||||||    
T  47523977 ttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 47524031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 33966892 - 33966932
Alignment:
Q  18 aataacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  33966892 aataacctaccgatcctacttacgaactgtgttacattcct 33966932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 43866448 - 43866492
Alignment:
Q  14 atcaaataacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| || |||| ||||||||||||||||||||||||||||||    
T  43866448 atcaaaaaagctactgatcctacttacgaaccgtgttacgttcct 43866492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 9454925 - 9454980
Alignment:
Q  48 gttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    ||||||||  |||||||||||| |||||||| |||||||| |||||||||||||||    
T  9454925 gttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacat 9454980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 50064174 - 50064228
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||| |||||||| |||||||  ||||||| ||||||||||||||||||||||||    
T  50064174 ttacattccttcagcggccgactgatcctacgtaggatctcgatcctgactacat 50064228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 53208485 - 53208431
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  53208485 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 53208431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 7323103 - 7323140
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7323103 aacctatcgatcctacttacgaaccgtgttacgttcct 7323140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 32130423 - 32130460
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  32130423 aacctatcgatcctacttacgaaccgtgttacgttcct 32130460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 32130466 - 32130523
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacatcag 106  Q
    |||||||| |||| ||||||| |||||||| |||||| |||| |||||||||||||||    
T  32130466 ttacgttctttcatcggccgaccgatcctacgtaggaactcgttcctgactacatcag 32130523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 9454883 - 9454914
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttac 52  Q
    ||||||||||||||||||||||||||||||||    
T  9454883 aacctaccgatcctacttacgaaccgtgttac 9454914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 7227382 - 7227436
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||| |||  |||||||  |||||||||||||||||||||||    
T  7227382 ttacgttctttcaccggacgactgatcctacataggatctcgatcctgactacat 7227436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 7323146 - 7323200
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| |||||| || | ||||||||||||    
T  7323146 ttacgttctttcaccggccgaccgatcctacgtaggaacttgttcctgactacat 7323200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 53208528 - 53208491
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  53208528 aacctatcgatcctacttatgaaccgtgttacgttcct 53208491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 50064128 - 50064156
Alignment:
Q  18 aataacctaccgatcctacttacgaaccg 46  Q
    |||||||||||||||||||||||||||||    
T  50064128 aataacctaccgatcctacttacgaaccg 50064156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 13425498 - 13425444
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  13425498 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 13425444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 25100831 - 25100781
Alignment:
Q  53 gttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 103  Q
    ||||||||||||||||| | |||||||||||||||| |||||| |||||||    
T  25100831 gttccttcaccggccgaccaatcctatgtaggatcttgatcctaactacat 25100781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 13425541 - 13425504
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    |||||| |||||||||||||||||||||||||||||||    
T  13425541 aacctatcgatcctacttacgaaccgtgttacgttcct 13425504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 18133745 - 18133708
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  18133745 aacctaccgatcctacttatgaaccgtgttacgttcct 18133708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 23889885 - 23889848
Alignment:
Q  21 aacctaccgatcctacttacgaaccgtgttacgttcct 58  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23889885 aacctaccgatcctactaacgaaccgtgttacgttcct 23889848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 453 - 508
Alignment:
Q  49 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacatc 104  Q
    |||||||||| |||||||| ||||| |||| |||||| |||| |||||||||||||    
T  453 ttacgttcctacaccggccaatcgaacctacgtaggaactcgttcctgactacatc 508  T

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