View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19002_low_5 (Length: 483)
Name: NF19002_low_5
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19002_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 438
Target Start/End: Original strand, 742148 - 742555
Alignment:
| Q |
12 |
aattctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742148 |
aattctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgc |
742247 |
T |
|
| Q |
112 |
caaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgtt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742248 |
caaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgtt |
742347 |
T |
|
| Q |
212 |
gattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttcttctcacaacaattctgttaattgtgcaacaaacctgaaaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
742348 |
gattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttcttctcacaac--ttctgttaattgtgcaacaaacctgaaaa |
742445 |
T |
|
| Q |
312 |
tttaattcagaataagtgaatgagacatgagatgcatattttgaacgttaaagactataagtctaaactagaattgnnnnnnnccaatgatgtcttcaat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
742446 |
tttaattcagaataagtgaatgagacatgagatgcatattttgaacgttaaagactataagtctaaa-----------------caatgatgtcttcaat |
742528 |
T |
|
| Q |
412 |
cttaggttgaattgaccgacatttgta |
438 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
742529 |
cttaggttgaattgaccgacatttgta |
742555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 387
Target Start/End: Original strand, 42449289 - 42449659
Alignment:
| Q |
23 |
gaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgag |
122 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||| |
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|
| T |
42449289 |
gaaatgctcactgacttcctgcattactcgatcgtgagctacttggatggtacattttcctgaaagtccacttaagagatgatcggcaccaaggttcgag |
42449388 |
T |
|
| Q |
123 |
gtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaa |
222 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
42449389 |
gtcatgataatgaccatgttcgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtaatttgttgattactgaag |
42449488 |
T |
|
| Q |
223 |
tatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttcttctcacaacaattctgttaattgtgcaacaaacctgaaaatttaattcaga |
322 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| || ||||||||||||||| | |||||| | |
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|
| T |
42449489 |
tatgtgctttctccacttcttccaaaagtagcacactgtttggccttcttctcacaac--ttctgttaatcgtccaacaaacctgaaaa-tcaattcaaa |
42449585 |
T |
|
| Q |
323 |
ataagtgaatgagacatgagatgcatattttgaac---------gttaaagactataagtctaaactagaattg |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
42449586 |
ataagtgaatgagacatgagatgcatatttcgaactcaagataagttaaagactataagtctaaactagaattg |
42449659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 740079 - 740319
Alignment:
| Q |
36 |
acttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacga |
135 |
Q |
| |
|
||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||| || | |||||||| ||||||||||||| || |
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|
| T |
740079 |
acttcctgcattactttatcgcgagcaacttccatggtacattttcctgaaagtccacttaggagatgctcggaaccaaggtttgaggtcatgataatga |
740178 |
T |
|
| Q |
136 |
ccgtgt-----tcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgct |
230 |
Q |
| |
|
| |||| || ||||||||||||||||||||||||||||||||| ||||||| | ||||| | ||| || |||| | |||||| ||||||||| |
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|
| T |
740179 |
ctgtgttcctatcctaaaatccacagttctgccttgtccatcagttagcctcccataatttaagacttcaagcagagtgtttaatacagatatatgtgct |
740278 |
T |
|
| Q |
231 |
ttctccacttcttcgaaaagtagcacaatgtttggccttct |
271 |
Q |
| |
|
|||||||||| || ||||||| |||| ||| ||||||||| |
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|
| T |
740279 |
ttctccacttgctctaaaagtatcacactgtgtggccttct |
740319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 34 - 252
Target Start/End: Complemental strand, 10046801 - 10046583
Alignment:
| Q |
34 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataac |
133 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||| |
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|
| T |
10046801 |
ttacttccagcattactcggtcgcgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgatcggcgccgaggtttgaggtcatgataat |
10046702 |
T |
|
| Q |
134 |
gaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttc |
233 |
Q |
| |
|
||| |||||| |||||||||||||||| ||||| ||||||||||| || || || |||| || | ||| || |||||| |||||| ||||||||||| |
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|
| T |
10046701 |
gactgtgttcctaaaatccacagttcttccttggccatcagttaatcttccgtcatctaggacttgaagcagagtgttgaatacagatgtatgtgctttc |
10046602 |
T |
|
| Q |
234 |
tccacttcttcgaaaagta |
252 |
Q |
| |
|
|| ||||| || ||||||| |
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|
| T |
10046601 |
tctacttcatcaaaaagta |
10046583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 38708406 - 38708308
Alignment:
| Q |
34 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataa |
132 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| || || |||||||| ||||||||||||| |
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|
| T |
38708406 |
ttacttcctgcattactcgatcacgagcaacttgcatggtgcattttcctgaaagtccacttatgagatgctcggcaccaaggtttgaggtcatgataa |
38708308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 45468462 - 45468309
Alignment:
| Q |
34 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataac |
133 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||| | |
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|
| T |
45468462 |
ttacttcctgcatcactcgatcgcgagcagcttgcatggtacattttcctgaaagtccactcaagagatgctcagcaccaaggttagaggtcatgatgat |
45468363 |
T |
|
| Q |
134 |
gaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatc |
187 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
45468362 |
cacagtgtttctaaaatccacagttctgccttgtccgtcagtcaacctcccatc |
45468309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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