View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19002_low_6 (Length: 456)

Name: NF19002_low_6
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19002_low_6
NF19002_low_6
[»] chr8 (2 HSPs)
chr8 (43-440)||(10566015-10566416)
chr8 (63-111)||(10567046-10567094)
[»] chr4 (2 HSPs)
chr4 (42-111)||(45520793-45520862)
chr4 (68-121)||(45521716-45521769)
[»] chr3 (3 HSPs)
chr3 (54-112)||(52727637-52727696)
chr3 (55-117)||(52728540-52728602)
chr3 (71-112)||(2431661-2431702)
[»] chr5 (1 HSPs)
chr5 (71-112)||(2734095-2734136)
[»] chr1 (1 HSPs)
chr1 (71-115)||(50551444-50551488)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 43 - 440
Target Start/End: Complemental strand, 10566416 - 10566015
Alignment:
Q  43 tatggacaggttatagcaggtaaactaatgaggtccaccaatggtcctttaaaattaaggtccatattagaggcttcctaaatataaatttatttgtaaa 142  Q
    |||||||| ||||||||||||||| ||||||| |||||||||  ||| ||||||||||||| ||||||||||| | ||||||||||||| | ||||||||    
T  10566416 tatggacaagttatagcaggtaaattaatgagatccaccaataatcccttaaaattaaggttcatattagagggtccctaaatataaatctctttgtaaa 10566317  T
Q  143 cgttccttaaactctaaatatatcttaccttgagcgagacaccatcccaccctaaatttccatcataaaagtaaaagaaatattgaaaatttgaagagag 242  Q
      || |||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10566316 tatttcttaaactctaaatatatcttatcttgagccagacaccatcgcaccctaaatttccatcataaaagtaaaagaaatattgaaaatttgaagagag 10566217  T
Q  243 ttttatgaaataagagagtnnnnnnnnnt----tcaataggcttctacataagtaaattcacatgggtcgtggtgtactttttatttttagggtatgaaa 338  Q
    |||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10566216 ttttatgaaataagagagtaaaaaaaaaaaaaatcaataggcttctacataagtaaattcacatgggtcgtggtgtactttttatttttagggtatgaaa 10566117  T
Q  339 ttggtttgtggtgtactttgctaaagtgactcattatgattaatgttcatgacactcttcctagctaataaagtttcaatacagttatttatgtgaaagg 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10566116 ttggtttgtggtgtactttgctaaagtgactcattatgattaatgttcatgacactcttcctagctaataaagtttcaatacagttatttatatgaaagg 10566017  T
Q  439 gg 440  Q
    ||    
T  10566016 gg 10566015  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 10567046 - 10567094
Alignment:
Q  63 taaactaatgaggtccaccaatggtcctttaaaattaaggtccatatta 111  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  10567046 taaactaatgaggtccaccaatgatcccttaaaattaaggtccatatta 10567094  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 45520862 - 45520793
Alignment:
Q  42 ctatggacaggttatagcaggtaaactaatgaggtccaccaatggtcctttaaaattaaggtccatatta 111  Q
    |||| |||| ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||    
T  45520862 ctatcgacatgttatagcaggtaaactaatgaggttcatcaatggtcccttaaaattaaggtccatatta 45520793  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 45521716 - 45521769
Alignment:
Q  68 taatgaggtccaccaatggtcctttaaaattaaggtccatattagaggcttcct 121  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| | ||||||    
T  45521716 taatgaggtccaccaatggtcccttaaaattaaggttcatattagggacttcct 45521769  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 52727696 - 52727637
Alignment:
Q  54 tatagcaggtaaactaatgaggtccaccaatggt-cctttaaaattaaggtccatattag 112  Q
    ||||| |||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  52727696 tatagtaggtaaactaatgaggtccaccaatggtacccataaaattaaggtccatattag 52727637  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 52728540 - 52728602
Alignment:
Q  55 atagcaggtaaactaatgaggtccaccaatggtcctttaaaattaaggtccatattagaggct 117  Q
    ||||||||| |||||||||||||||  |||| ||||||||||||||| |||||||||| ||||    
T  52728540 atagcaggttaactaatgaggtccataaatgatcctttaaaattaagatccatattaggggct 52728602  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 2431702 - 2431661
Alignment:
Q  71 tgaggtccaccaatggtcctttaaaattaaggtccatattag 112  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  2431702 tgaggtgcaccaatggtccttttaaattgaggtccatattag 2431661  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 2734136 - 2734095
Alignment:
Q  71 tgaggtccaccaatggtcctttaaaattaaggtccatattag 112  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  2734136 tgaggtgcaccaatggtccttttaaattgaggtccatattag 2734095  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 50551444 - 50551488
Alignment:
Q  71 tgaggtccaccaatggtcctttaaaattaaggtccatattagagg 115  Q
    ||||||||||| ||| |||||| ||||||||| ||||||||||||    
T  50551444 tgaggtccaccgatgatccttttaaattaaggaccatattagagg 50551488  T

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