View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19002_low_7 (Length: 451)
Name: NF19002_low_7
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19002_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 85 - 434
Target Start/End: Original strand, 6636240 - 6636589
Alignment:
| Q |
85 |
ggcaaagtcaagaatatatatgaaaaccatgtaagaggatggaagttggtggagttcacatatatagttttggatttatatggtttagtattttgaacca |
184 |
Q |
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| T |
6636240 |
ggcaaagtcaagaatatatatgaaaaccatgtaagaggatggaagttggtggagttcacatatatagttttggatttatatggtttagtattttgaacca |
6636339 |
T |
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| Q |
185 |
tttttcaggtatgggatggggacccttaccatcctcttaataaggatatgaatttcttcatgtctcattaacttatgatttttattttgtatataattta |
284 |
Q |
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| T |
6636340 |
tttttcaggtatgggatggggacccttaccatcctcttaataaggatatgaatttcttcatgtctcattaacttatgatttttattttgtatataatgta |
6636439 |
T |
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| Q |
285 |
tggtttttgtactcaattaattatggattaagccatgggatggggatataaaagagcatttatccatttacaaatacacaaggtagacataccagtgcat |
384 |
Q |
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| T |
6636440 |
tggtttttgtactcaattaattatggattaagccatgggatggggatataaaagagcatttatccatttacaaatacacaaggtagacataccagtgcat |
6636539 |
T |
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| Q |
385 |
ttatgtatcataaaagaggaaatgtatctgaatatgtcagaatcatattg |
434 |
Q |
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| T |
6636540 |
ttatgtatcataaaagaggaaatgtatctgaatatgtcagaatcatattg |
6636589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 6636177 - 6636208
Alignment:
| Q |
36 |
agtggcttgctagctggatgggttagcataat |
67 |
Q |
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| T |
6636177 |
agtggcttgctagctggatgggttagcataat |
6636208 |
T |
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