View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19002_low_9 (Length: 419)

Name: NF19002_low_9
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19002_low_9
NF19002_low_9
[»] chr6 (3 HSPs)
chr6 (169-404)||(8096153-8096389)
chr6 (84-195)||(7308716-7308826)
chr6 (356-384)||(7325233-7325261)
[»] chr3 (2 HSPs)
chr3 (112-151)||(31005193-31005232)
chr3 (112-192)||(21334808-21334888)
[»] chr7 (1 HSPs)
chr7 (77-151)||(7392849-7392922)
[»] scaffold0451 (1 HSPs)
scaffold0451 (253-383)||(9905-10036)
[»] chr4 (1 HSPs)
chr4 (119-180)||(36681691-36681752)
[»] chr2 (1 HSPs)
chr2 (99-151)||(12776986-12777037)
[»] chr1 (1 HSPs)
chr1 (117-149)||(4144783-4144815)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 169 - 404
Target Start/End: Original strand, 8096153 - 8096389
Alignment:
Q  169 gtaaagttattattttgattagtggaatgaattaagagttgctatttcatccagagtaagtcaatttaaacaacattttgtgtttttcttcctttttctt 268  Q
    ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8096153 gtaaagttactcttttgattagtggaatgaattaagagttgctttttcatccagagtaagtcaatttaaacaacattttgtgtttttcttcctttttctt 8096252  T
Q  269 ccttcatattgatgtttattttgttcgagatatttattgcgttcttttggttttggttaccatcaattttgctcaacacataagtattggtgtgactctg 368  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8096253 ccttcatattgatgtttattttgttcgagattattattgcgttcttttggttttggttaccatcaattttgctcaacacataagtattggtgtgactctg 8096352  T
Q  369 ttcgaattcacaacaagaa-agatcaagtggatggat 404  Q
    |||||||||||||||||||  ||| ||||||||||||    
T  8096353 ttcgaattcacaacaagaatggattaagtggatggat 8096389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 7308716 - 7308826
Alignment:
Q  84 tctatttgtcacggaaagagattcggaaaaaatggtagaattaggtttgaagattgattattgtaattgctatcaaaatctttatgtaaagttattattt 183  Q
    |||||| |||| |||||||||||| | |||| || ||||||||||||||||||||| || |||||||| || | | ||||| | |||||||||| | |||    
T  7308716 tctattggtcatggaaagagattcaggaaaa-tgctagaattaggtttgaagattggttcttgtaattccttttagaatctctttgtaaagttactcttt 7308814  T
Q  184 tgattagtggaa 195  Q
    ||||||||||||    
T  7308815 tgattagtggaa 7308826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 7325233 - 7325261
Alignment:
Q  356 tggtgtgactctgttcgaattcacaacaa 384  Q
    |||||||||||||||||||||||||||||    
T  7325233 tggtgtgactctgttcgaattcacaacaa 7325261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 151
Target Start/End: Original strand, 31005193 - 31005232
Alignment:
Q  112 aaaatggtagaattaggtttgaagattgattattgtaatt 151  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  31005193 aaaatggtagaattaggtttgaagaatgatttttgtaatt 31005232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 21334888 - 21334808
Alignment:
Q  112 aaaatggtagaattaggtttgaagattgattattgtaattgctatcaaaatctttatgtaaagttattattttgattagtg 192  Q
    |||| |||||||||||||||||||| || || |||||||| || |   ||||||| |||||||||| | | ||||||||||    
T  21334888 aaaagggtagaattaggtttgaagactggttcttgtaattccttttggaatctttgtgtaaagttactctcttgattagtg 21334808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 7392922 - 7392849
Alignment:
Q  77 cattgagtctatttgtcacggaaagagattcggaaaaaatggtagaattaggtttgaagattgattattgtaatt 151  Q
    |||||||||| || |||| ||  |||||||  ||||||| |||||||||||||||||||| ||||| ||||||||    
T  7392922 cattgagtctcttggtcaagggtagagatttagaaaaaa-ggtagaattaggtttgaagactgattcttgtaatt 7392849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0451 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 383
Target Start/End: Original strand, 9905 - 10036
Alignment:
Q  253 tttcttcctttttcttccttcatattgatgtttattttgttcgagatatttattgcgttcttttggttttggttaccatcaattttgctcaacacat--a 350  Q
    |||||||| | ||| ||||| |||||| ||||||| ||||||  |||  |||||| | || ||||||||||||| ||||||||||   ||||| |||  |    
T  9905 tttcttccgtcttcatccttaatattgttgtttatattgttcatgattattattgtgctcgtttggttttggttgccatcaatttat-tcaacgcatcaa 10003  T
Q  351 agtattggtgtgactctgttcgaattcacaaca 383  Q
    |||||||| ||||||||  | ||||||||||||    
T  10004 agtattggcgtgactctaatggaattcacaaca 10036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 36681691 - 36681752
Alignment:
Q  119 tagaattaggtttgaagattgattattgtaattgctatcaaaatctttatgtaaagttatta 180  Q
    |||||||| ||||||||||||||| |||||||| || |   ||||||| |||||||||||||    
T  36681691 tagaattatgtttgaagattgattcttgtaatttcttttggaatctttgtgtaaagttatta 36681752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 12776986 - 12777037
Alignment:
Q  99 aagagattcggaaaaaatggtagaattaggtttgaagattgattattgtaatt 151  Q
    |||||||||| | |||| ||||||||||||||| |||||||||| ||||||||    
T  12776986 aagagattcg-agaaaagggtagaattaggttttaagattgattcttgtaatt 12777037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 4144815 - 4144783
Alignment:
Q  117 ggtagaattaggtttgaagattgattattgtaa 149  Q
    |||||||||||||||||||||||||| ||||||    
T  4144815 ggtagaattaggtttgaagattgattcttgtaa 4144783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University