View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19003_high_10 (Length: 363)
Name: NF19003_high_10
Description: NF19003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19003_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 33550243 - 33550454
Alignment:
| Q |
6 |
ctccaataatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcg |
105 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550243 |
ctccaacaatatcatcattttccaaacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcg |
33550342 |
T |
|
| Q |
106 |
ctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550343 |
ctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaa |
33550442 |
T |
|
| Q |
206 |
ggtacgttatca |
217 |
Q |
| |
|
|||||||||||| |
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|
| T |
33550443 |
ggtacgttatca |
33550454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 26230617 - 26230829
Alignment:
| Q |
6 |
ctccaataatatcatcattttccagacaatgttgacattatttttggatactacggaaataat-ctttttaaagttataatgttcagggaagtattttgc |
104 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26230617 |
ctccaacaatatcatcattttccagacaatgttgacattatttttggatactacggaaataattctttttaaagttataatgttcagggaagtattttgc |
26230716 |
T |
|
| Q |
105 |
gctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230717 |
gctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatca |
26230816 |
T |
|
| Q |
205 |
aggtacgttatca |
217 |
Q |
| |
|
||||||||||||| |
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|
| T |
26230817 |
aggtacgttatca |
26230829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 26230909 - 26230975
Alignment:
| Q |
297 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230909 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
26230975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 33550533 - 33550599
Alignment:
| Q |
297 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33550533 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
33550599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 8335589 - 8335378
Alignment:
| Q |
6 |
ctccaataatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcg |
105 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8335589 |
ctccaacaatatcatcattttccagacaatgttgacattatttttggatactatggaaataatctttttaaagttataatgttcagggaagttttttgcg |
8335490 |
T |
|
| Q |
106 |
ctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8335489 |
ctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttcaacactccaatcaa |
8335390 |
T |
|
| Q |
206 |
ggtacgttatca |
217 |
Q |
| |
|
||||| |||||| |
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|
| T |
8335389 |
ggtacattatca |
8335378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 8335298 - 8335235
Alignment:
| Q |
297 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtg |
360 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8335298 |
agatgttgcccgatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtg |
8335235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 4684949 - 4684810
Alignment:
| Q |
78 |
gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684949 |
gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt |
4684850 |
T |
|
| Q |
178 |
ctgataatgatttaaacactccaatcaaggtacgttatca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4684849 |
ctgataatgatttaaacactccaatcaaggtacgttatca |
4684810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 4684730 - 4684664
Alignment:
| Q |
297 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4684730 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg |
4684664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 26632560 - 26632645
Alignment:
| Q |
6 |
ctccaataatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcag |
91 |
Q |
| |
|
|||||| |||||||||||||| | || |||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
26632560 |
ctccaacaatatcatcatttttccgataatgttgacattctttttggataatataaaaataatctttttaaagttataatgttcag |
26632645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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