View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19003_high_12 (Length: 348)
Name: NF19003_high_12
Description: NF19003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19003_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 6636587 - 6636249
Alignment:
| Q |
1 |
atatgattctgacatattcagatacatttcctcttttatgatacataaatgcactggtatgtctaccttgtgtatttgtaaatggataaatgctctttta |
100 |
Q |
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| T |
6636587 |
atatgattctgacatattcagatacatttcctcttttatgatacataaatgcactggtatgtctaccttgtgtatttgtaaatggataaatgctctttta |
6636488 |
T |
|
| Q |
101 |
tatccccatcccatggcttaatccataattaattgagtacaaaaaccataaattatatacaaaataaaaatcataagttaatgagacatgaagaaattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6636487 |
tatccccatcccatggcttaatccataattaattgagtacaaaaaccatacattatatacaaaataaaaatcataagttaatgagacatgaagaaattca |
6636388 |
T |
|
| Q |
201 |
tatccttattaagaggatggtaagggtccccatcccatacctgaaaaatggttcaaaatactaaaccatataaatccaaaactatatatgtgaactccac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6636387 |
tatccttattaagaggatggtaagggtccccatcccatacctgaaaaatggttcaaaatactaaaccatataaatccaaaactatatatgtgaactccac |
6636288 |
T |
|
| Q |
301 |
caacttccatcctcttacatggttttcatatatattctt |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
6636287 |
caacttccatcctcttacatggttttcatatatattctt |
6636249 |
T |
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