View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19003_high_7 (Length: 393)

Name: NF19003_high_7
Description: NF19003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19003_high_7
NF19003_high_7
[»] chr5 (24 HSPs)
chr5 (21-364)||(28080547-28080890)
chr5 (215-364)||(28080804-28080953)
chr5 (219-364)||(28080871-28081016)
chr5 (219-310)||(28080934-28081025)
chr5 (315-365)||(27930008-27930058)
chr5 (315-365)||(27930416-27930466)
chr5 (315-365)||(27930620-27930670)
chr5 (310-364)||(27931029-27931083)
chr5 (315-365)||(28081171-28081221)
chr5 (315-365)||(28081375-28081425)
chr5 (315-365)||(28081579-28081629)
chr5 (315-365)||(28081783-28081833)
chr5 (315-365)||(27930824-27930874)
chr5 (247-306)||(27931024-27931083)
chr5 (252-310)||(27930000-27930058)
chr5 (252-310)||(27930204-27930262)
chr5 (252-310)||(27930408-27930466)
chr5 (252-310)||(27930612-27930670)
chr5 (252-310)||(28081171-28081229)
chr5 (252-310)||(28081375-28081433)
chr5 (252-310)||(28081579-28081637)
chr5 (252-310)||(28081783-28081841)
chr5 (252-310)||(27930816-27930874)
chr5 (315-364)||(27930213-27930262)


Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 28080547 - 28080890
Alignment:
Q  21 acatcatcattgatgacattgttatctactgcataatcagaaacatgatgcaattgtagagttggtgtcccttgataggataagtgtggatacaaattct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080547 acatcatcattgatgacattgttatctactgcataatcagaaacatgatgcaattgtagagttggtgtcccttgataggataagtgtggatacaaattct 28080646  T
Q  121 tgttgccaatactcatcatattcgagtgttgagaaatatcaatgagaggatcaaccggaaaattgatagtacctgtagaatcattcatatgaagtaacga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080647 tgttgccaatactcatcatattcgagtgttgagaaatatcaatgagaggatcaaccggaaaattgatagtacctgtagaatcattcatatgaagtaacga 28080746  T
Q  221 tcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgttg 320  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080747 tcgctggtcaaaagatcggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgttg 28080846  T
Q  321 aaaaaatgattagatgatgataatgatcgctggtcaaaagattg 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28080847 aaaaaatgattagatgatgataatgatcgctggtcaaaagattg 28080890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 215 - 364
Target Start/End: Original strand, 28080804 - 28080953
Alignment:
Q  215 taacgatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaa 314  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||||    
T  28080804 taacgattgctgttcaaaaggttggcaatgtcttgaactgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaa 28080903  T
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattg 364  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28080904 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattg 28080953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 219 - 364
Target Start/End: Original strand, 28080871 - 28081016
Alignment:
Q  219 gatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgt 318  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||||||||    
T  28080871 gatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaactgt 28080970  T
Q  319 tgaaaaaatgattagatgatgataatgatcgctggtcaaaagattg 364  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||    
T  28080971 tgaacaaatgattagatgatgataatgatcgcagttcaaaagattg 28081016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 28080934 - 28081025
Alignment:
Q  219 gatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| ||||||||||||    
T  28080934 gatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatgatgataatgatcgcagttcaaaagattggcaatgtct 28081025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 27930058 - 27930008
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattga 365  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27930058 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattga 27930008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 27930466 - 27930416
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattga 365  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27930466 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattga 27930416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 27930670 - 27930620
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattga 365  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27930670 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattga 27930620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 27931083 - 27931029
Alignment:
Q  310 ttgaactgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattg 364  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27931083 ttgaactgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattg 27931029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 28081171 - 28081221
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattga 365  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28081171 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattga 28081221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 28081375 - 28081425
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattga 365  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28081375 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattga 28081425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 28081579 - 28081629
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattga 365  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28081579 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattga 28081629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 28081783 - 28081833
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattga 365  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28081783 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattga 28081833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 27930874 - 27930824
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattga 365  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  27930874 ctgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattga 27930824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 27931083 - 27931024
Alignment:
Q  247 ttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaat 306  Q
    |||||||||||||||||||||||||||||||||| ||| | || ||||||| ||||||||    
T  27931083 ttgaactgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattggcaat 27931024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930058 - 27930000
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  27930058 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930262 - 27930204
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    |||| |||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||    
T  27930262 ctgtcgaacaaataattagatgatgataatgattgctggtcaaaagattggcaatgtct 27930204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930466 - 27930408
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  27930466 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930670 - 27930612
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  27930670 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 27930612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081171 - 28081229
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081171 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081375 - 28081433
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081375 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081579 - 28081637
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081579 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081783 - 28081841
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||    
T  28081783 ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct 28081841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930874 - 27930816
Alignment:
Q  252 ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct 310  Q
    ||||||||||||||||||||||||||||| ||| | || ||||||| ||| ||||||||    
T  27930874 ctgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattgacaatgtct 27930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 27930262 - 27930213
Alignment:
Q  315 ctgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattg 364  Q
    |||| ||| |||| ||||||||||||||||||| ||||||||||||||||    
T  27930262 ctgtcgaacaaataattagatgatgataatgattgctggtcaaaagattg 27930213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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