View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19003_high_8 (Length: 382)

Name: NF19003_high_8
Description: NF19003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19003_high_8
NF19003_high_8
[»] chr8 (4 HSPs)
chr8 (134-367)||(7934749-7934978)
chr8 (134-367)||(34578705-34578935)
chr8 (10-102)||(7935010-7935101)
chr8 (10-102)||(34578582-34578673)
[»] chr2 (4 HSPs)
chr2 (151-364)||(45623364-45623575)
chr2 (10-81)||(45623235-45623304)
chr2 (10-79)||(16248453-16248520)
chr2 (13-66)||(9809470-9809522)
[»] chr5 (2 HSPs)
chr5 (186-366)||(29846975-29847154)
chr5 (188-366)||(29867169-29867346)
[»] chr7 (1 HSPs)
chr7 (10-57)||(27128904-27128951)
[»] chr4 (1 HSPs)
chr4 (10-79)||(31888808-31888875)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 134 - 367
Target Start/End: Complemental strand, 7934978 - 7934749
Alignment:
Q  134 aacagtttccataggaaccatagccacaaataatctctcactttgagtttgtcctataaaatatctcactttgagtttgtaaaacaagcaatcacannnn 233  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  7934978 aacaggttccataggaaccatatccacaaataatctctcactttgagtttgtcctataaaatatctcactttgagtttgtaaaacaagcaatcacatttt 7934879  T
Q  234 nnnnncttctgagtttcagttttatccgcctactctttaataatgcagacctcatcaaaacttgtgatcctttgagtttaaattgtatcttagcatacac 333  Q
          || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7934878 tt----ttttgagtttcagttttatccgcctactctttaataatgcagccctcatcagaacttgtgatcctttgagtttaaattgtatcttagcatacac 7934783  T
Q  334 caccaaagctagtagactgccactgttaaagctg 367  Q
    ||||||||| |||||||| |||||||||||||||    
T  7934782 caccaaagccagtagactaccactgttaaagctg 7934749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 134 - 367
Target Start/End: Original strand, 34578705 - 34578935
Alignment:
Q  134 aacagtttccataggaaccatagccacaaataatctctcactttgagtttgtcctataaaatatctcactttgagtttgtaaaacaagcaatcacannnn 233  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        
T  34578705 aacaggttccataggaactatagccacaaataatctctcactttgagtttgtcgtataaaatatctcactttgagtttgtaaaacaagcaatcacatttt 34578804  T
Q  234 nnnnncttctgagtttcagttttatccgcctactctttaataatgcagacctcatcaaaacttgtgatcctttgagtttaaattgtatcttagcatacac 333  Q
          |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34578805 ttt---ttctgagtttcagttttatccgcctactctttaataatgcagccctcatcaaaacttgtgatcctttgagtttaaattgtatcttagaatacac 34578901  T
Q  334 caccaaagctagtagactgccactgttaaagctg 367  Q
    |||||||||||||||| | |||||||||||||||    
T  34578902 caccaaagctagtagattaccactgttaaagctg 34578935  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 7935101 - 7935010
Alignment:
Q  10 ttgatctagaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcctattcatatgcaccgttcaattttcgtggg 102  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||   || |||||||||||||||    
T  7935101 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagagagaaaagtctatcctatacatattttcc-ttcaattttcgtggg 7935010  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 34578582 - 34578673
Alignment:
Q  10 ttgatctagaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcctattcatatgcaccgttcaattttcgtggg 102  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||   || |||||||||||||||    
T  34578582 ttgatctaaaggttgagacacaaagagggaagagaaaattaagggagagagaaaagtctatcctattcatattttcc-ttcaattttcgtggg 34578673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 151 - 364
Target Start/End: Original strand, 45623364 - 45623575
Alignment:
Q  151 ccatagccacaaataatctctcactttgagtttgtcctataaaatatctcactttgagtttgtaaaacaagcaatcacannnnnnnnncttctgagtttc 250  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||          |||||||||||    
T  45623364 ccatagccacaaataatctctcattttgagtttgtcctataaaatatctcactttgagtttgtaaaacaagcaaccacatttttttt--ttctgagtttc 45623461  T
Q  251 agttttatccgcctactctttaataatgcagacctcatcaaaacttgtgatcctttgagtttaaattgtatcttagcatacaccaccaaagctagtagac 350  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45623462 agttttatccgcctactctttaataatgcagccctcatcaaaacttgtgatcctttgagtttaaattgtatcatagcatacaccaccaaagctagtagac 45623561  T
Q  351 tgccactgttaaag 364  Q
    | ||||||||||||    
T  45623562 taccactgttaaag 45623575  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 45623235 - 45623304
Alignment:
Q  10 ttgatctagaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcctattcatat 81  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  45623235 ttgatctaaaggttgagacaca--gagggaagagaaaattaggggagagagaaaagtctatcctattcatat 45623304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 16248453 - 16248520
Alignment:
Q  10 ttgatctagaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcctattcat 79  Q
    |||||||| |||||||||| ||  |||||||||||||||||| ||||| |||||||| | ||||||||||    
T  16248453 ttgatctaaaggttgagacgca--gagggaagagaaaattagaggagagagaaaagtttgtcctattcat 16248520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 9809470 - 9809522
Alignment:
Q  13 atctagaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagt 66  Q
    ||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  9809470 atctaaaggttgagacacaa-gagggaagagaaaattagaggagagagaaaagt 9809522  T

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Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 186 - 366
Target Start/End: Complemental strand, 29847154 - 29846975
Alignment:
Q  186 cctataaaatatctcactttgagtttgtaaaacaagcaatcacannnnnnnnncttctgagtttcagttttatccgcctactctttaataatgcagacct 285  Q
    |||||||||| |||||||||||||||||||||||||||||||||         |||||||||||||||||||||| | |||||||||||||||||| |||    
T  29847154 cctataaaatctctcactttgagtttgtaaaacaagcaatcacaatttttttccttctgagtttcagttttatccccttactctttaataatgcagccct 29847055  T
Q  286 catcaaaacttgtgatcctttgagtttaaattgtatcttagcatacaccaccaaagctagtagactgccactgttaaagct 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  29847054 catcaaaacttgtgatcctttgagtttaaattgtatcttagcatacaccacc-aagctagtagattaccactgttaaagct 29846975  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 188 - 366
Target Start/End: Complemental strand, 29867346 - 29867169
Alignment:
Q  188 tataaaatatctcactttgagtttgtaaaacaagcaatcacannnnnnnnncttctgagtttcagttttatccgcctactctttaataatgcagacctca 287  Q
    |||||||| |||||||||||||||||||||||||||||||||         |||||||||||||||||||||| | |||||||||||||||||| |||||    
T  29867346 tataaaatctctcactttgagtttgtaaaacaagcaatcacaatttttttccttctgagtttcagttttatccccttactctttaataatgcagccctca 29867247  T
Q  288 tcaaaacttgtgatcctttgagtttaaattgtatcttagcatacaccaccaaagctagtagactgccactgttaaagct 366  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  29867246 tcaaaacttgcgatcctttgagtttaaattgtatcttagcatacaccacc-aagctagtagattaccactgttaaagct 29867169  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 27128951 - 27128904
Alignment:
Q  10 ttgatctagaggttgagacacaaagagggaagagaaaattaggggaga 57  Q
    |||||||| ||||||||||||||||||| ||||||||||||| |||||    
T  27128951 ttgatctaaaggttgagacacaaagaggaaagagaaaattagaggaga 27128904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 31888875 - 31888808
Alignment:
Q  10 ttgatctagaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcctattcat 79  Q
    |||||||| |||||||||| ||  |||||||||||||||||| ||||| |||||||| | ||||||||||    
T  31888875 ttgatctaaaggttgagacgca--gagggaagagaaaattagaggagagagaaaagtttgtcctattcat 31888808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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