View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19004_high_2 (Length: 332)
Name: NF19004_high_2
Description: NF19004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19004_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 39949169 - 39949475
Alignment:
| Q |
11 |
aagaatatatggaaccttgaaacactgtaaccacagtaaaaccttaagcttctgtttaaaaaatagatgctcccaagattcagactggtatctgctttaa |
110 |
Q |
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| T |
39949169 |
aagaatatatggaaccttgaaacactgtaaccacagtaaaaccttaagcttctgtttaaaaaatagatgctcccaagaatcagactggtatctgctttaa |
39949268 |
T |
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| Q |
111 |
gcgaactgcgattggcaggcccatatatccaacccctaagcaaaagatccattgtaccaaagatagaggtgttgtatttgcgaaggttcccaagtactca |
210 |
Q |
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| T |
39949269 |
gcgaactgcgattggcatgcccatatatccaacccctaagcaaaagatccattgtaccaaagatagaggtgttgtatttgcaaaggttcccaagtactca |
39949368 |
T |
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| Q |
211 |
actattatgatttggaagaccacagttgcactgatgacagccacgaacacatgattatcccatatgcctttaaaaacgtctatttcctccatttcgcgag |
310 |
Q |
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| T |
39949369 |
actattatgatttggaagaccacagttgcactgatgacagccacgaacacatgattatcccatatgcctttaaaaacgtctatttcctccatttcgcgag |
39949468 |
T |
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| Q |
311 |
agtttat |
317 |
Q |
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| T |
39949469 |
agtttat |
39949475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 317
Target Start/End: Complemental strand, 5421374 - 5421146
Alignment:
| Q |
89 |
ttcagactggtatctgctttaagcgaactgcgattggcaggcccatatatccaacccctaagcaaaagatccattgtaccaaagatagaggtgttgtatt |
188 |
Q |
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| T |
5421374 |
ttcagacggggatcttctttaagcgagcagcaataggcattcccataaatccaacaaataagcaaaagaaccactgtaccagagtgagaggtgttgtgtt |
5421275 |
T |
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| Q |
189 |
tgcgaaggttcccaagtactcaactattatgatttggaagaccacagttgcactgatgacagccacgaacacatgattatcccatatgcctttaaaaacg |
288 |
Q |
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| T |
5421274 |
tgcaaaggttcccaagtactccacgattatgatttgaaagaagattgtagcactgatcacacccacgaagacatagttatccaatatgcctttaaaaaca |
5421175 |
T |
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| Q |
289 |
tctatttcctccatttcgcgagagtttat |
317 |
Q |
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| T |
5421174 |
ttaattttctccatctcacgtgagtttat |
5421146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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