View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19004_low_1 (Length: 354)
Name: NF19004_low_1
Description: NF19004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19004_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 188 - 333
Target Start/End: Original strand, 12529119 - 12529261
Alignment:
| Q |
188 |
agcaatttgacaagtaattaccataaagatcttacataatatttatttgaataaaatactttcaaactagtttaagtttaaattaaagcataattatcat |
287 |
Q |
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| T |
12529119 |
agcaatttgacaagtaa---caataaagatcttacataatatttatttgtttaaaataatttcaaactagtttaagtttaaattaaagcataattatcat |
12529215 |
T |
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| Q |
288 |
ttcatctattacttttaaaacatattttgttcctaaattcttatac |
333 |
Q |
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|||||||||||| |||||||||| | | | ||||||||||||||| |
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| T |
12529216 |
ttcatctattacatttaaaacatggtctatacctaaattcttatac |
12529261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 12529006 - 12529098
Alignment:
| Q |
38 |
tttcaattaacttctacctagttatttggttctatcaaaatatcatcttttaattaccaagaaaacacaattattcattagcactataatcag |
130 |
Q |
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| T |
12529006 |
tttcaactaacttgtgcctagttatttggttctatcaaaatataatcttttaattactaaggaaacacggttattcattagcactataatcag |
12529098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 44668557 - 44668454
Alignment:
| Q |
188 |
agcaatttgacaagtaattaccataaagatcttacataatatttatttgaataaaatactttcaaactagtttaagtttaaattaaagcataattatcat |
287 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44668557 |
agcaatttgacaagtaa---caataaagatcttacataatatttatttggttaaaataatttcaaactagtttaagtttaaattaaagcataattatcat |
44668461 |
T |
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| Q |
288 |
ttcatct |
294 |
Q |
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||||||| |
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| T |
44668460 |
ttcatct |
44668454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 44668670 - 44668578
Alignment:
| Q |
38 |
tttcaattaacttctacctagttatttggttctatcaaaatatcatcttttaattaccaagaaaacacaattattcattagcactataatcag |
130 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||| |
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| T |
44668670 |
tttcaactaacttgtacctagttatttggttctatcaaaatataatcttttaattactaaggaaacacggttattcattagcactataatcag |
44668578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 44668438 - 44668384
Alignment:
| Q |
279 |
aattatcatttcatctattacttttaaaacatattttgttcctaaattcttatac |
333 |
Q |
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||||||||||||||||||||| |||||||||| | | | ||||||||||||||| |
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| T |
44668438 |
aattatcatttcatctattacatttaaaacatggtctatacctaaattcttatac |
44668384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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