View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19004_low_4 (Length: 236)

Name: NF19004_low_4
Description: NF19004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19004_low_4
NF19004_low_4
[»] chr8 (9 HSPs)
chr8 (41-221)||(28974922-28975102)
chr8 (51-148)||(43848086-43848183)
chr8 (55-146)||(40263642-40263733)
chr8 (51-147)||(17275573-17275668)
chr8 (76-128)||(43856140-43856192)
chr8 (85-127)||(15646078-15646120)
chr8 (85-135)||(29043202-29043252)
chr8 (85-127)||(15622307-15622349)
chr8 (41-135)||(17279127-17279222)
[»] chr1 (16 HSPs)
chr1 (41-148)||(33064804-33064913)
chr1 (51-135)||(8983801-8983885)
chr1 (41-133)||(15318080-15318171)
chr1 (51-148)||(41917075-41917173)
chr1 (48-125)||(17122823-17122900)
chr1 (50-142)||(27534239-27534331)
chr1 (51-146)||(21487822-21487917)
chr1 (85-128)||(24230212-24230255)
chr1 (86-125)||(33012786-33012825)
chr1 (86-125)||(31720970-31721008)
chr1 (85-147)||(19274274-19274336)
chr1 (85-131)||(30109394-30109440)
chr1 (85-127)||(34528924-34528966)
chr1 (85-126)||(19054391-19054432)
chr1 (86-126)||(10433229-10433269)
chr1 (85-133)||(13309378-13309426)
[»] chr7 (5 HSPs)
chr7 (51-135)||(38993094-38993178)
chr7 (53-148)||(20382332-20382427)
chr7 (85-126)||(37375040-37375081)
chr7 (83-125)||(17354787-17354829)
chr7 (55-120)||(11292543-11292608)
[»] chr4 (13 HSPs)
chr4 (51-148)||(38499834-38499931)
chr4 (61-135)||(13242195-13242269)
chr4 (41-133)||(44673674-44673766)
chr4 (66-125)||(42805644-42805702)
chr4 (56-126)||(39117219-39117289)
chr4 (92-125)||(12714267-12714300)
chr4 (87-128)||(13030164-13030205)
chr4 (85-126)||(34657919-34657960)
chr4 (85-126)||(37005907-37005948)
chr4 (85-148)||(10703802-10703866)
chr4 (85-148)||(10917572-10917636)
chr4 (85-133)||(34512091-34512139)
chr4 (94-126)||(42227160-42227192)
[»] chr2 (11 HSPs)
chr2 (53-148)||(27206366-27206461)
chr2 (66-148)||(20374101-20374183)
chr2 (41-148)||(20434166-20434275)
chr2 (85-125)||(3914252-3914292)
chr2 (85-125)||(44395789-44395829)
chr2 (85-116)||(16109966-16109997)
chr2 (86-125)||(22266334-22266373)
chr2 (87-128)||(11938936-11938977)
chr2 (87-128)||(24474795-24474836)
chr2 (60-132)||(13198123-13198195)
chr2 (53-125)||(28522851-28522923)
[»] scaffold0041 (1 HSPs)
scaffold0041 (51-148)||(3376-3473)
[»] chr5 (10 HSPs)
chr5 (66-147)||(22602016-22602097)
chr5 (41-111)||(21027037-21027109)
chr5 (85-126)||(28637649-28637690)
chr5 (85-125)||(16987843-16987883)
chr5 (86-126)||(31552404-31552444)
chr5 (85-148)||(31792592-31792654)
chr5 (86-123)||(18191210-18191247)
chr5 (89-125)||(4809193-4809229)
chr5 (85-125)||(17764947-17764987)
chr5 (85-125)||(35358628-35358667)
[»] chr6 (8 HSPs)
chr6 (44-148)||(13580140-13580244)
chr6 (53-133)||(34673074-34673154)
chr6 (85-126)||(7242881-7242922)
chr6 (53-126)||(24373514-24373587)
chr6 (85-126)||(24617739-24617780)
chr6 (85-126)||(30884431-30884472)
chr6 (86-126)||(15050042-15050082)
chr6 (85-125)||(34338101-34338141)
[»] scaffold0111 (1 HSPs)
scaffold0111 (41-148)||(41219-41328)
[»] scaffold0024 (2 HSPs)
scaffold0024 (51-148)||(160303-160400)
scaffold0024 (75-133)||(145976-146034)
[»] chr3 (7 HSPs)
chr3 (66-148)||(20952400-20952482)
chr3 (85-128)||(19185107-19185150)
chr3 (83-126)||(27310738-27310781)
chr3 (66-135)||(10287672-10287741)
chr3 (86-127)||(27636905-27636946)
chr3 (60-127)||(27639974-27640041)
chr3 (86-125)||(26934871-26934910)
[»] scaffold0416 (1 HSPs)
scaffold0416 (85-126)||(14841-14882)
[»] scaffold1331 (1 HSPs)
scaffold1331 (66-125)||(559-617)
[»] scaffold0021 (1 HSPs)
scaffold0021 (83-125)||(118665-118707)
[»] scaffold0292 (1 HSPs)
scaffold0292 (85-133)||(21251-21299)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 28975102 - 28974922
Alignment:
Q  41 aataaaattttctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattct 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28975102 aataaaattttctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattct 28975003  T
Q  141 ggcttagcnnnnnnnttaatggtaatgtgcggttagactcatccctaaaatcaaaggtgatttcacaccaattttcctttg 221  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28975002 ggcttagcaaaaaaattaatggtaatgtgcggttagactcatccctaaaatcaaaggtgatttcacaccaattttcctttg 28974922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 43848183 - 43848086
Alignment:
Q  51 tctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttagc 148  Q
    |||||||| ||||| |||||||  ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||    
T  43848183 tctgagattggcggcataggatgagggttctgcggggtgccaacctagttgggatgttgttgcttccccttgatgcctgtccaatctcctggcttagc 43848086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 40263733 - 40263642
Alignment:
Q  55 agatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggctta 146  Q
    |||| ||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||| || |||||||| |||||| | ||||||||    
T  40263733 agattggcggcataggatgggggttctgcagggtgccaacctagttgggatgttgttgcttcaccctgatgcctgtccaatctcctggctta 40263642  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 17275668 - 17275573
Alignment:
Q  51 tctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttag 147  Q
    |||||||| || || ||||||| |||||| ||| |||||||| | ||||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  17275668 tctgagattggtggtataggatgggggttctgcggggtgcca-cttagttgggatgtcgttgcttcccgttgatgcctgtccaatatcctggcttag 17275573  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 43856140 - 43856192
Alignment:
Q  76 ggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcct 128  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  43856140 ggttctgcggggtgccaacctagttgggatgtcgttacttccccttgatgcct 43856192  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 15646120 - 15646078
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcc 127  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  15646120 gggtgccaacctagttgggatgtcgtttcttctccttgatgcc 15646078  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 29043202 - 29043252
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaat 135  Q
    |||||||||||||||| |||||||||||||||||| |||||| | ||||||    
T  29043202 gggtgccaacctagtttggatgtcgttgcttccccctgatgcttgtccaat 29043252  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 15622349 - 15622307
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcc 127  Q
    ||||||||||||||||||||||||||| |||  ||||||||||    
T  15622349 gggtgccaacctagttgggatgtcgtttcttatccttgatgcc 15622307  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 17279222 - 17279127
Alignment:
Q  41 aataaaattttct--gagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaat 135  Q
    |||||||||||||  ||||| || || ||||||| |||||| ||| |||||||| | ||||||||||| |||||||||   ||||||||| ||||||    
T  17279222 aataaaattttctctgagattggtggtataggatgggggttctgcggggtgccatc-tagttgggatgccgttgcttctttttgatgcctgtccaat 17279127  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 33064913 - 33064804
Alignment:
Q  41 aataaaattttct--gagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatatt 138  Q
    |||||||||||||  ||||| ||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |     
T  33064913 aataaaattttctctgagattggcggtataggatgggggttctgcggggtgccaacctagttgggatgtcgttgcttccccttgatgcctgtccaatctc 33064814  T
Q  139 ctggcttagc 148  Q
    ||||||||||    
T  33064813 ctggcttagc 33064804  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 8983801 - 8983885
Alignment:
Q  51 tctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaat 135  Q
    |||||||| ||| | ||||||| |||||| |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  8983801 tctgagattggctgcataggatgggggttctgcagggtgccaacctagtttggatgttgttgcttccccctgatgcctatccaat 8983885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 15318171 - 15318080
Alignment:
Q  41 aataaaattttctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatcca 133  Q
    ||||||||||  |||| | ||||| ||||||| |||||| ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  15318171 aataaaatttcttgagtttggcggcataggatgggggttctgc-gggtgccaatctagttgggatgtcgtttcttccccttgatgcctatcca 15318080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 41917075 - 41917173
Alignment:
Q  51 tctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgctt-ccccttgatgcctatccaatattctggcttagc 148  Q
    |||||||| | ||| ||||||| |||||| | | ||||||||||||||||||||||| ||||||| ||||||||||||| |||||| | ||||||||||    
T  41917075 tctgagattgacggcataggatgggggttctccggggtgccaacctagttgggatgttgttgcttcccccttgatgcctgtccaatctcctggcttagc 41917173  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 17122823 - 17122900
Alignment:
Q  48 ttttctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    ||||||||| | ||||| |||||||  ||||| ||| |||||||||||||||||||||||||||||||| ||||||||    
T  17122823 ttttctgagtttggcggcataggatgagggttctgcggggtgccaacctagttgggatgtcgttgcttctccttgatg 17122900  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 27534239 - 27534331
Alignment:
Q  50 ttctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctgg 142  Q
    ||||||| | ||||| |||||||  ||||| |||||||| |||| ||||||||||| |||||| ||||||||||||||| |||| | ||||||    
T  27534239 ttctgagtttggcggcataggatgtgggttctgcagggtaccaatctagttgggatatcgttgtttccccttgatgcctgtccattcttctgg 27534331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 21487917 - 21487822
Alignment:
Q  51 tctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggctta 146  Q
    |||||| | ||||| ||||||| |||||| | | ||||||||||||||||||||||||||  ||||| |||||||||| |||| | | ||||||||    
T  21487917 tctgagtttggcggcataggatgggggttcttcggggtgccaacctagttgggatgtcgtcacttcctcttgatgcctgtccactctcctggctta 21487822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 24230212 - 24230255
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcct 128  Q
    ||||| |||||||||||||||||||||||||| |||||||||||    
T  24230212 gggtgtcaacctagttgggatgtcgttgcttctccttgatgcct 24230255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 33012786 - 33012825
Alignment:
Q  86 ggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  33012786 ggtgccaacctagttgggatgtcgttgcttctccttgatg 33012825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 31721008 - 31720970
Alignment:
Q  86 ggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  31721008 ggtgccaacctagttgggatgtcgttgc-tccccttgatg 31720970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 19274274 - 19274336
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttag 147  Q
    ||||||||||||||||||||  |||| |||| ||||||||||||  ||||| | |||||||||    
T  19274274 gggtgccaacctagttgggaattcgtcgcttgcccttgatgcctcaccaatctcctggcttag 19274336  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 30109394 - 30109440
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcctatc 131  Q
    ||||||||||||| ||| ||||||||||||||||||| ||| |||||    
T  30109394 gggtgccaacctaattgagatgtcgttgcttccccttaatgtctatc 30109440  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 34528966 - 34528924
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcc 127  Q
    ||||||||||||||||||||||||| || |||| |||||||||    
T  34528966 gggtgccaacctagttgggatgtcgctgtttcctcttgatgcc 34528924  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 19054432 - 19054391
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    ||||||||||||||||||||||||| || |||| ||||||||    
T  19054432 gggtgccaacctagttgggatgtcggtgtttcctcttgatgc 19054391  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 10433229 - 10433269
Alignment:
Q  86 ggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    ||||| |||||||||||||||||| ||||||| ||||||||    
T  10433229 ggtgcaaacctagttgggatgtcggtgcttcctcttgatgc 10433269  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 13309426 - 13309378
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcctatcca 133  Q
    ||||||||||||||||||||||||| || | || |||||||||| ||||    
T  13309426 gggtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtcca 13309378  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 38993178 - 38993094
Alignment:
Q  51 tctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaat 135  Q
    |||||||| ||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  38993178 tctgagattggcggcataggatgggggttctgcggggtgccaacctagttgggatgtcgttgcttccccctgatgcctgtccaat 38993094  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 20382332 - 20382427
Alignment:
Q  53 tgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttagc 148  Q
    |||||| ||||| ||||||| |||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||| |||| | ||||||||||    
T  20382332 tgagattggcggcataggatgggggttctgcggggtgccaacctagttgggatgttgttgcttccccctgatgcctattcaatctcctggcttagc 20382427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 37375040 - 37375081
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  37375040 gggtgccaacctagttgggatgtcgtcgcttccccttgatgc 37375081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 17354829 - 17354787
Alignment:
Q  83 cagggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||||||| |||||||||||||||| |||||||||||||||||    
T  17354829 cagggtgctaacctagttgggatgttgttgcttccccttgatg 17354787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 11292608 - 11292543
Alignment:
Q  55 agatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttcccct 120  Q
    |||| ||||| ||||||| |||||| ||| ||||||||| |||||| |||||| ||||||||||||    
T  11292608 agattggcggcataggatgggggttctgcggggtgccaatctagttaggatgttgttgcttcccct 11292543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 38499931 - 38499834
Alignment:
Q  51 tctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttagc 148  Q
    |||||||| ||||| |||||||  ||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||| | ||||||||||    
T  38499931 tctgagattggcggcataggatgagggttttgcggggtgccaacctagttgggatgttgttgcttccccctgatgcctgtccaatctcctggcttagc 38499834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 13242195 - 13242269
Alignment:
Q  61 gcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaat 135  Q
    |||| ||||||| |||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  13242195 gcggtataggatgggggttctgcggggtgccaacctagtttggatgccgttgcttccccttgatgcctgtccaat 13242269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 44673766 - 44673674
Alignment:
Q  41 aataaaattttctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatcca 133  Q
    |||||||||||  ||| | ||||| ||||||| | | || ||| ||||||||||||||||||||||||| || | || ||||||| |||||||    
T  44673766 aataaaatttttagagtttggcggcataggatggagattttgcggggtgccaacctagttgggatgtcgatgttgcctcttgatgtctatcca 44673674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 42805702 - 42805644
Alignment:
Q  66 ataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    ||||||| || ||| ||| ||||||||||||||||||| ||||| |||||||||||||||    
T  42805702 ataggatgggagttctgcggggtgccaacctagttggg-tgtcgctgcttccccttgatg 42805644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 39117289 - 39117219
Alignment:
Q  56 gatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    ||||||||| | ||||| ||||||   | ||||| ||| ||||||||||||| ||||||||||||||||||    
T  39117289 gatcggcggtagaggatgggggttcatcggggtgtcaatctagttgggatgttgttgcttccccttgatgc 39117219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 12714267 - 12714300
Alignment:
Q  92 aacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||||||||||||| |||||||||||||||||||    
T  12714267 aacctagttgggatatcgttgcttccccttgatg 12714300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 13030205 - 13030164
Alignment:
Q  87 gtgccaacctagttgggatgtcgttgcttccccttgatgcct 128  Q
    |||||||||||||| |||||||||| |||| |||||||||||    
T  13030205 gtgccaacctagttaggatgtcgttacttctccttgatgcct 13030164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 34657960 - 34657919
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    ||||||||||||||||||||||||| || |||| ||||||||    
T  34657960 gggtgccaacctagttgggatgtcggtgtttcctcttgatgc 34657919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 37005948 - 37005907
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||    
T  37005948 gggtgccaacctaattgggatgtcggtgcttcctcttgatgc 37005907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 10703866 - 10703802
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgctt-ccccttgatgcctatccaatattctggcttagc 148  Q
    ||||||||| |||||||||||||| |||||| |||| |||||||| |||||| |  |||||||||    
T  10703866 gggtgccaatctagttgggatgtcattgcttcccccctgatgcctgtccaatctcatggcttagc 10703802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 10917636 - 10917572
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgctt-ccccttgatgcctatccaatattctggcttagc 148  Q
    ||||||||| |||||||||||||| |||||| |||| |||||||| |||||| |  |||||||||    
T  10917636 gggtgccaatctagttgggatgtcattgcttcccccctgatgcctgtccaatctcatggcttagc 10917572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 34512091 - 34512139
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcctatcca 133  Q
    ||||||||||||||||||||||||| || | || |||||||||| ||||    
T  34512091 gggtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtcca 34512139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 42227192 - 42227160
Alignment:
Q  94 cctagttgggatgtcgttgcttccccttgatgc 126  Q
    |||||||||||||| ||||||||||||||||||    
T  42227192 cctagttgggatgttgttgcttccccttgatgc 42227160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 27206461 - 27206366
Alignment:
Q  53 tgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttagc 148  Q
    |||||| | ||| ||||||| |||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||| | ||||||||||    
T  27206461 tgagattgacggcataggatgggggttctgcggggtgccaacctagttgggatgttgttgcttccccctgatgcctgtccaatctcctggcttagc 27206366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 20374183 - 20374101
Alignment:
Q  66 ataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttagc 148  Q
    ||||||| |||||| ||| ||||| ||||||||||||||||||||||||||||||||||| || |||||| | | ||||||||    
T  20374183 ataggatgggggttctgcggggtggcaacctagttgggatgtcgttgcttccccttgatgtctgtccaatctcccggcttagc 20374101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 20434275 - 20434166
Alignment:
Q  41 aataaaatttt--ctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatatt 138  Q
    |||||||||||  ||||| | ||||| ||||||| |||||| ||| ||||||||||||||||| |||||||||| || ||||| |||| | |||||| |     
T  20434275 aataaaattttatctgagtttggcggcataggatgggggttttgcggggtgccaacctagttgtgatgtcgttgtttacccttaatgcatgtccaatctc 20434176  T
Q  139 ctggcttagc 148  Q
    | ||||||||    
T  20434175 ccggcttagc 20434166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 3914292 - 3914252
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  3914292 gggtgccaacctagttgggatgtcgttgcttctccttgatg 3914252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 44395789 - 44395829
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  44395789 gggtaccaacctagttgggatgtcgttgcttctccttgatg 44395829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 116
Target Start/End: Complemental strand, 16109997 - 16109966
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttc 116  Q
    ||||||||||||||||||||||||||||||||    
T  16109997 gggtgccaacctagttgggatgtcgttgcttc 16109966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 22266373 - 22266334
Alignment:
Q  86 ggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  22266373 ggtgtcaacctagttgggatgtcgttgcttccccctgatg 22266334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 11938936 - 11938977
Alignment:
Q  87 gtgccaacctagttgggatgtcgttgcttccccttgatgcct 128  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||    
T  11938936 gtgccaacctagttgcgatatcgtttcttccccttgatgcct 11938977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 24474836 - 24474795
Alignment:
Q  87 gtgccaacctagttgggatgtcgttgcttccccttgatgcct 128  Q
    |||||||| |||||||||||||| |||||| |||||||||||    
T  24474836 gtgccaacatagttgggatgtcgatgcttctccttgatgcct 24474795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 13198195 - 13198123
Alignment:
Q  60 ggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatcc 132  Q
    ||||| ||||||| |||||| | |  |||| ||| ||| ||||||||||||||||||||||| |||| |||||    
T  13198195 ggcggcataggatgggggttcttcgaggtgtcaatctaattgggatgtcgttgcttccccttaatgcatatcc 13198123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 28522851 - 28522923
Alignment:
Q  53 tgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||||| ||||| ||||||| | |||| |  |||||||||||||||||||||||||  || |||| |||||||    
T  28522851 tgagattggcggcataggatggaggttctctagggtgccaacctagttgggatgtcaatgtttcctcttgatg 28522923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 3473 - 3376
Alignment:
Q  51 tctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttagc 148  Q
    |||||||| ||||| ||||||| |||||| ||| | ||||||||||||||||||||| ||||||||||| |||||||| |||||| |  |||||||||    
T  3473 tctgagattggcggcataggatgggggttctgcggagtgccaacctagttgggatgttgttgcttccccctgatgcctgtccaatctcttggcttagc 3376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 22602097 - 22602016
Alignment:
Q  66 ataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttag 147  Q
    ||||||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||| || |||||| ||||| |||||    
T  22602097 ataggatgggggttctgcggggtgccaacctagttgggatgtcgttgattccccttgatgtctgtccaatcttctgccttag 22602016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 21027109 - 21027037
Alignment:
Q  41 aataaaatttt--ctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgtt 111  Q
    |||||||||||  ||||| | ||||| ||||||| |||||| ||| |||||||||||||||||||||||||||    
T  21027109 aataaaattttatctgagtttggcggcataggatgggggttctgcggggtgccaacctagttgggatgtcgtt 21027037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 28637649 - 28637690
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  28637649 gggtgccaacctagttgggatgtcgtcgcttccccttgatgc 28637690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 16987843 - 16987883
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  16987843 gggtgccaacctagttgggatgtcgttgcttctccttgatg 16987883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 31552444 - 31552404
Alignment:
Q  86 ggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  31552444 ggtgccaacctagttgggatgtcgttgcttctccttgatgc 31552404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 31792592 - 31792654
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttagc 148  Q
    |||||||||||||||||||||||||| |||||||| ||||||||  ||||| | ||||||||||    
T  31792592 gggtgccaacctagttgggatgtcgtcgcttcccc-tgatgcctcaccaatgtcctggcttagc 31792654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 18191247 - 18191210
Alignment:
Q  86 ggtgccaacctagttgggatgtcgttgcttccccttga 123  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  18191247 ggtgccaacctagtttggatgtcgtcgcttccccttga 18191210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 4809193 - 4809229
Alignment:
Q  89 gccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  4809193 gccaacctagttaggaggtcgttgcttccccttgatg 4809229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 17764947 - 17764987
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    ||||||||| ||| |||||||||||||||||| ||||||||    
T  17764947 gggtgccaatctaattgggatgtcgttgcttctccttgatg 17764987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 35358628 - 35358667
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  35358628 gggtgccaacctagttgggatgccgttgc-tccccttgatg 35358667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 13580244 - 13580140
Alignment:
Q  44 aaaattttctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggc 143  Q
    |||| |||||||| | ||||| ||||||| |||||| | | ||||||||||||| | ||||||||||||||| |||||||||||| |||||| | |||||    
T  13580244 aaaaatttctgaggttggcggcataggatgggggttctacggggtgccaacctaatggggatgtcgttgctttcccttgatgcctgtccaatctcctggc 13580145  T
Q  144 ttagc 148  Q
    |||||    
T  13580144 ttagc 13580140  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 34673154 - 34673074
Alignment:
Q  53 tgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatcca 133  Q
    |||||| ||||| ||||||| |||||| |||  |||| ||||||||||||||||||||||||| ||||||||| |||||||    
T  34673154 tgagattggcggtataggatgggggttctgcgaggtgtcaacctagttgggatgtcgttgctttcccttgatgtctatcca 34673074  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 7242922 - 7242881
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  7242922 gggtgccaacctagttgggatgtcgtcgcttcctcttgatgc 7242881  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 24373514 - 24373587
Alignment:
Q  53 tgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    |||||| ||||| ||||||| | |||| | |||||| |||||||||||||||||||  ||||||| | ||||||    
T  24373514 tgagattggcggcataggatggaggttctccagggtaccaacctagttgggatgtcagtgcttcctcgtgatgc 24373587  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 24617780 - 24617739
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    ||||||||||||||||||||||||| || |||| ||||||||    
T  24617780 gggtgccaacctagttgggatgtcggtgtttcctcttgatgc 24617739  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 30884431 - 30884472
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  30884431 gggtgtcaacctagttgggatgtcgttgattctccttgatgc 30884472  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 15050082 - 15050042
Alignment:
Q  86 ggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    |||||||||||||||||||| |||||| |||| ||||||||    
T  15050082 ggtgccaacctagttgggatatcgttgtttcctcttgatgc 15050042  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 34338141 - 34338101
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    ||||||||||||||||||||||||| || |||| |||||||    
T  34338141 gggtgccaacctagttgggatgtcgatgattcctcttgatg 34338101  T

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Target: scaffold0111 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 41328 - 41219
Alignment:
Q  41 aataaaatttt--ctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatatt 138  Q
    |||||||||||  ||||| | ||||| |||||||  ||||| ||| ||||||||||||||||||||| |||||||||||||||||||| | |||||| |     
T  41328 aataaaattttatctgagtttggcggcataggatgagggttctgcggggtgccaacctagttgggatttcgttgcttccccttgatgcatgtccaatctc 41229  T
Q  139 ctggcttagc 148  Q
    | ||||||||    
T  41228 ccggcttagc 41219  T

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Target: scaffold0024 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 160303 - 160400
Alignment:
Q  51 tctgagatcggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttagc 148  Q
    |||||||| ||||| |||| || |||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||   |||||| | ||||||||||    
T  160303 tctgagattggcggcatagaatgggggttctgcggggtggcaacctagttgggatgtcgttgcttccccctgatgcaggtccaatctcctggcttagc 160400  T

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Target: scaffold0024; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 146034 - 145976
Alignment:
Q  75 gggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatcca 133  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  146034 gggttatgcggggtagcaacctagttgggatgtcgttgcttccccttgatgcctgtcca 145976  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 20952400 - 20952482
Alignment:
Q  66 ataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaatattctggcttagc 148  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||| |||||| | |||||| |  |||||||||    
T  20952400 ataggatgggggttctgcggggtgccaacctagttgggatgtcgttacttccccctgatgcttgtccaatctcatggcttagc 20952482  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 19185107 - 19185150
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcct 128  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  19185107 gggtgccaacctagttgggatgtcgttgcttctccttgatgcct 19185150  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 27310781 - 27310738
Alignment:
Q  83 cagggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  27310781 cagggtgccaacctagttgggttgtcgttgcttccccttgatgc 27310738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 10287741 - 10287672
Alignment:
Q  66 ataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcctatccaat 135  Q
    ||||||| || ||| ||| |||||||||||||||||||||| | ||||||||||||||||| | ||||||    
T  10287741 ataggatgggagttttgcggggtgccaacctagttgggatgccattgcttccccttgatgcgtgtccaat 10287672  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 27636946 - 27636905
Alignment:
Q  86 ggtgccaacctagttgggatgtcgttgcttccccttgatgcc 127  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  27636946 ggtgtcaacctagttgggatgtcgttgcttccccttgatgcc 27636905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 27640041 - 27639974
Alignment:
Q  60 ggcggaataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatgcc 127  Q
    |||||| |||||| |||||||  | ||||| ||||||||||| |||||||||||||||| ||||||||    
T  27640041 ggcggagtaggatgggggttaatcggggtgtcaacctagttgcgatgtcgttgcttccctttgatgcc 27639974  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 26934871 - 26934910
Alignment:
Q  86 ggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  26934871 ggtgccaacctaattgggatgtcgtcgcttccccttgatg 26934910  T

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Target: scaffold0416 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 14841 - 14882
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgc 126  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  14841 gggtgccaacctagttgggatgtcgttgcttctccttgatgc 14882  T

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Target: scaffold1331 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1331
Description:

Target: scaffold1331; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 617 - 559
Alignment:
Q  66 ataggattggggttatgcagggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    ||||||| |||||| ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  617 ataggatgggggttctgc-gggtgccaagctagttgggatgtcgctgcttccccttgatg 559  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 118707 - 118665
Alignment:
Q  83 cagggtgccaacctagttgggatgtcgttgcttccccttgatg 125  Q
    |||||| |||||||||||||||||||||||||||  |||||||    
T  118707 cagggttccaacctagttgggatgtcgttgcttcttcttgatg 118665  T

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Target: scaffold0292 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 21251 - 21299
Alignment:
Q  85 gggtgccaacctagttgggatgtcgttgcttccccttgatgcctatcca 133  Q
    ||||||||||||||||||||||||| || | || |||||||||| ||||    
T  21251 gggtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtcca 21299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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