View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19005_high_10 (Length: 375)
Name: NF19005_high_10
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 22 - 365
Target Start/End: Complemental strand, 31663150 - 31662807
Alignment:
| Q |
22 |
agagaattggttgaaaaatgtaatatacattgtacagttgattaagaaacatggaatctacccccgattcatttctttgatcttccagtaaagggtgctg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31663150 |
agagaattggttgaaaaatgtaatatacattgtacagttgattaagaaacatggaatctacccccgattcatttctttgatcttccagtaatgggtgctg |
31663051 |
T |
|
| Q |
122 |
ctttgctttagtatatcttgtcgattttgacatatttttagtataatctttggttatgtagaaaaatggccaacgatgtccaacattttgaagttagcac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31663050 |
ctttgctttagtatatcttgtcgattttgacatatttttagtataatctttggttatgtagaaaaatggccaatgatgtccaacattttgaagttagcac |
31662951 |
T |
|
| Q |
222 |
ttctacttgcggttggattggttgagcttcaacaaacaaactcaatggcattttgatcatcagaaatagtgctgttgtggataagattaagggtctcaaa |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31662950 |
ttctacttgcggttggattggttgagcttcaactaacaaactcaatggtattttgatcatcagaaatagtgctgtcgtggataagattaagggtctcaaa |
31662851 |
T |
|
| Q |
322 |
gcatataatttcttcaaaaagtaatcttctaatccaagtctgtg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31662850 |
gcatataatttcttcaaaaagtaatcttctaatccaagtctgtg |
31662807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 359
Target Start/End: Original strand, 22559249 - 22559349
Alignment:
| Q |
257 |
acaaactcaatggcattttgatcatcagaaatagtgctgttgtggataagattaagggtctcaaagcatataatttcttcaaaaagtaatcttctaatcc |
356 |
Q |
| |
|
||||||||||| ||| || ||||||||||| | || | |||||||| ||||||| |||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
22559249 |
acaaactcaatatcatcttcatcatcagaaacactgttcttgtggatgggattaagtgtctcaaagcatataactccttcaaaa--caatcttctaatcc |
22559346 |
T |
|
| Q |
357 |
aag |
359 |
Q |
| |
|
||| |
|
|
| T |
22559347 |
aag |
22559349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 7277758 - 7277694
Alignment:
| Q |
296 |
ttgtggataagattaagggtctcaaagcatataatttcttcaaaaagtaatcttctaatccaagtct |
362 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
7277758 |
ttgtggattggattaagtgtctcaaagcatataattccttcaaaa--caatcttctaatccaagtct |
7277694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University