View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_high_14 (Length: 339)
Name: NF19005_high_14
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 103 - 323
Target Start/End: Complemental strand, 39830710 - 39830490
Alignment:
| Q |
103 |
cattggcgatcagaagtagacgttgaagtttcgctgtatagattgagagaattttgagcattttcgtcacacattgttaggtagggtcttctgctgccca |
202 |
Q |
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| T |
39830710 |
cattggcgatcagaagtagacgttgaagtttcgctgtatagattgagagaattttgagcattttcgtcacacattgttaggtagggtcttctgctgccca |
39830611 |
T |
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| Q |
203 |
caaatttcttctaggtcatcaactactagggaatataaatcatctcttttagcaattgattttcgttagatcgataataaaacaaacatgatacattata |
302 |
Q |
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| T |
39830610 |
caaatttcttctaggtcatcaactactagggaatataaatcatctcttttagcaattgattttcgttagatcgataataaaacaaacatgatatattata |
39830511 |
T |
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| Q |
303 |
gagatcacatactaagaaaaa |
323 |
Q |
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| T |
39830510 |
gagatcacatactaagaaaaa |
39830490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 39830818 - 39830765
Alignment:
| Q |
1 |
taacaaatagataatatagactcttgaagtaaacaattgtatatatttcatatt |
54 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
39830818 |
taacaaatagataatatagactcttcaagtaaacaattgtatacttttcatatt |
39830765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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