View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_high_15 (Length: 334)
Name: NF19005_high_15
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 2794880 - 2795183
Alignment:
| Q |
18 |
ccttgcattatctaacatccatcactcggattttacattttcagccaacaaatttttccagcatatgcaatcacaaacttcagaaaaacatttatgcatt |
117 |
Q |
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| T |
2794880 |
ccttgcattatctaacatccatcactcggattttacattttcagccaacaaatttttccagcatatgcaatcacaaacttcagaaagacattcatgcatt |
2794979 |
T |
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| Q |
118 |
gaagcctattctataatgtctcaaatcaaacatttcacatggaatttatctaatcaatgcataaaatcctaagcttacaacattttgtgattctggttgg |
217 |
Q |
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| T |
2794980 |
gaagcctattctataatgtctcaaatcaaccatttcacatggaatttatctaatcaatgcat---------agcttacaacattttgtgattctggttgg |
2795070 |
T |
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| Q |
218 |
gtatgtatgacgaagagacgctcaagacag-aaaagtcatttactttggtcccaacgtgatttgatgatcttgtaaaacgcaaccagcagaaaacaggtg |
316 |
Q |
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| T |
2795071 |
gtatgtatgacgaagagacactcaagacagaaaaagtcatttactttggtcccaacgtgatttgatgatcttgtaaaatgcaaccagcagaaaacaggtg |
2795170 |
T |
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| Q |
317 |
caacttatctgtg |
329 |
Q |
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||||||||||||| |
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| T |
2795171 |
caacttatctgtg |
2795183 |
T |
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