View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_high_18 (Length: 294)
Name: NF19005_high_18
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 41596655 - 41596949
Alignment:
| Q |
1 |
ctctgatccaaatccaaaccttgacgatttca---------acccttatgtgggcccatccaattcggagccactagttttttcttctgatacaaccaaa |
91 |
Q |
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| T |
41596655 |
ctctgatccaaatccaaaccttgacgatttcaccatcaccaacccttatgtgggcccatccaattcggagccactagttttttcttctgatacaaccaaa |
41596754 |
T |
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| Q |
92 |
gattctacctttgaagatgctgatttttcagaaacagtgaaatatataagccagattttaatggaagaagattttgaacaaaaaccatgtatgtgttatg |
191 |
Q |
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| T |
41596755 |
gattctacctttgaagatgctgatttttcagaaacagtgaaatatataagccagattttaatggaagaagaatttgaacaaaaaccatgtatgtgttatg |
41596854 |
T |
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| Q |
192 |
atccacttagtcttcaacatactgagaaaattttctttgatgctttggaatcaaatttgcctctttcacctaatcaacaccctcttgatattctt |
286 |
Q |
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| T |
41596855 |
acccacttagtcttcaacatactgagaaaattttctttgatgctttggaatcaaatttgcctctttcacctaatcaacaccctcttgatgttctt |
41596949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 31 - 286
Target Start/End: Original strand, 27325961 - 27326210
Alignment:
| Q |
31 |
caacccttatgtgggcccatccaattcggagccactagttttttcttctgatacaaccaaagattctacctttgaagatgctgatttttcagaaacagtg |
130 |
Q |
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|||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
27325961 |
caactcttatgtgggcccatccaatttggagccactcgttttttcttctgatgcaaccaaagattctacctttaaagatgctaatttttcagaagcagtg |
27326060 |
T |
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| Q |
131 |
aaatatataagccagattttaatggaagaagattttgaacaaaaaccatgtatgtgttatgatccacttagtcttcaacatactgagaaaattttctttg |
230 |
Q |
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| T |
27326061 |
aaatatataagccatattttgatggaaaaagattttgaacaaaaaccatgtatgtgttatgacccgcttagtcttc----tactgagaaaattttctttg |
27326156 |
T |
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| Q |
231 |
atgctttggaatcaaatttgcctctttcacctaatcaacaccctcttgatattctt |
286 |
Q |
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||||||| |||| ||||||| |||| |||||||| |||||||||| || ||||| |
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| T |
27326157 |
atgctttagaattaaatttg--tcttgcacctaattcacaccctcttcatgttctt |
27326210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 28916288 - 28916484
Alignment:
| Q |
31 |
caacccttatgtgggcccatccaattcggagccactagttttttcttctgatacaaccaaagattctacctttgaagatgctgatttttcagaaacagtg |
130 |
Q |
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||||||||| ||||||| | ||| |||| ||||| |||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||||| || |
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| T |
28916288 |
caacccttacgtgggccaacccatttcgaagccatccgttttttcttctaatgcaaccaaagattctacatttgaagatgctgatctttcagaaacattg |
28916387 |
T |
|
| Q |
131 |
aaatatataagccagattttaatggaagaagattttgaacaaaaaccatgtatgtgttatgatccacttagtcttcaacatactgagaaaattttct |
227 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28916388 |
aaatatataagccagattctaatgttagaagattttgaacaaataccatgtatgtgttatgacccacttagtcttcaacatactgagaaaattttct |
28916484 |
T |
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