View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19005_high_2 (Length: 701)
Name: NF19005_high_2
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 49 - 578
Target Start/End: Complemental strand, 44164693 - 44164164
Alignment:
| Q |
49 |
tgtcctccacgatatcctccacattcgatacttgatcattaaaaatccggttattccgagctctccaaagggaccaaagagtggcatgccaaatgagcca |
148 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44164693 |
tgtcctccacgatatcctccacattcgatacttgatcattaaaaatccggttattccgagctctccaaagggaccaaagagtggcatgccaaatgagcca |
44164594 |
T |
|
| Q |
149 |
aagaccacgccgaatctttttattcctctcccaagcgatccaacataggcggtgattaaaaatattcggtcgagttaaaattttttactccaaccaattc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
44164593 |
aagaccacgccgaatctttttattcctctcccaagcgatccaacataggcagtgattaaaaagattcggtcgagttaaaaagttatactccaaccaattc |
44164494 |
T |
|
| Q |
249 |
attacttccctccaaacccttgaagccaccgagcaatgaaggaaaaggtgattcgatgtttccactccattatcacacaacacacaaaccatcgaggcct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44164493 |
attacttccctccaaacccttgaagccaccgagcaatgaaggaaaaggtgattcgatgtttccactccattatcacacaacacacaaaccatcgaggcct |
44164394 |
T |
|
| Q |
349 |
ccaaaggaaggacattcctcacatgaagatttacctttgttggaagacgatcaagcaacaacttccaagagaacgcgaccactttcaaaggtgccgggct |
448 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44164393 |
ccaaaggaaggacattcctcacatgaagatttacctttgttggaagacgatcaagcaacaacttccaagagaacgcgaccactttcaaaggtgtcgggct |
44164294 |
T |
|
| Q |
449 |
tttccacacttgtgaaaacactagtttctcctcttccctccataaatcttctatcaacaccaaacttaccaacttctcataagcggattttacctagaag |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44164293 |
tttccacacttgtgaaaacactagtttctcctcttccctccataaatcttctatcaacaccaaacttaccaacttctcataagcggattttaccgagaag |
44164194 |
T |
|
| Q |
549 |
cacccatcctcctccaacttccacctccaa |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
44164193 |
cacccatcctcctccaacttccacctccaa |
44164164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 579 - 691
Target Start/End: Complemental strand, 44163496 - 44163384
Alignment:
| Q |
579 |
accgaattaataagtactattctacccacgaaactaatatatttgtgaccccatgaatttaatctccgatctaaaagatctaccaaaggttgccaaatag |
678 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44163496 |
accgaattaataagtactattctacccacgaaactaatatatttgtgaccccatgaatttaatctccgatctaaaagatctaccaaaggttgccaaatag |
44163397 |
T |
|
| Q |
679 |
cgctactcctatg |
691 |
Q |
| |
|
||||||||||||| |
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|
| T |
44163396 |
cgctactcctatg |
44163384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 43401291 - 43401238
Alignment:
| Q |
129 |
gtggcatgccaaatgagccaaagaccacgccgaatctttttattcctctcccaa |
182 |
Q |
| |
|
|||||||||||||| ||||||||||| || || ||||||||||||||||||||| |
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|
| T |
43401291 |
gtggcatgccaaataagccaaagacctcgacgtatctttttattcctctcccaa |
43401238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 44164959 - 44164920
Alignment:
| Q |
19 |
tgaacgaccaacgccaagataacaccttgatgtcctccac |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
44164959 |
tgaacgaccaacgccaagataacaccttgacgtcctccac |
44164920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 9808791 - 9808749
Alignment:
| Q |
291 |
aaaaggtgattcgatgtttccactccattatcacacaacacac |
333 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
9808791 |
aaaaggtgatatgatgtttccactccattattacacaacacac |
9808749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 20161954 - 20161518
Alignment:
| Q |
19 |
tgaacgaccaacgccaagataacaccttgatgtcctccacgatatcctccacattcgatacttgatcattaaaaatccggttattccgagctctccaaag |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||||||| ||||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||| |
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| T |
20161954 |
tgaatgaccaacgccaagataacaccttcacatcctccacaatatcctccgcattcgatacatgatcattaaaaa-ccggttatttttggctctccaaag |
20161856 |
T |
|
| Q |
119 |
ggaccaaagag--tggcatgccaaatgagccaaagaccacgccgaatctttttattcctctcccaagcgatccaacataggcggtgattaaaaatattcg |
216 |
Q |
| |
|
||||| | | | |||||| ||||||||||| ||| ||| || |||||| ||||||| |||| | |||||||| | | |||| |||||| ||| | |
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|
| T |
20161855 |
catccaaacacaattgaatgccatatgagccaaaggccatgcctaacctttttgttcctctgccaaccattccaacattgacagtgaataaaaagattgg |
20161756 |
T |
|
| Q |
217 |
gtcgagttaaaattttttactccaaccaattcattacttccctccaaacccttgaagccaccgagcaatgaaggaaaaggtgattcgatgtttccactcc |
316 |
Q |
| |
|
|| || |||| | || |||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| || |
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| T |
20161755 |
gtggaattaagaaattaaactccaaccaattcgatactttcatccaaacccttgaagccaccgaacaatgaaggaaaatgtgattcgacgtttccacccc |
20161656 |
T |
|
| Q |
317 |
attatcacacaacacacaaaccatcgaggcctccaaaggaaggacattcctcacatgaagatttacctttgttggaagacgatcaagcaacaacttccaa |
416 |
Q |
| |
|
|| | |||||||||||||| ||| | |||||| | ||||| |||||||| ||||||||||| ||| ||||||||| | |||| ||||| || ||||| |
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|
| T |
20161655 |
atcaccacacaacacacaagccaatggagcctccgatggaagtacattcctaacatgaagattcacccttgttggaatatgatctagcaataatctccaa |
20161556 |
T |
|
| Q |
417 |
gagaacgcgaccactttcaaaggtgccgggcttttcca |
454 |
Q |
| |
|
||||| || || ||||||||||| ||||| |||||||| |
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|
| T |
20161555 |
gagaatgccacaactttcaaaggggccggacttttcca |
20161518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 21942479 - 21942535
Alignment:
| Q |
398 |
atcaagcaacaacttccaagagaacgcgaccactttcaaaggtgccgggcttttcca |
454 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| | || |||||||||||||| |
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|
| T |
21942479 |
atcatgcaacaacttccaagagaaagcgaccactttagacggagccgggcttttcca |
21942535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 132 - 577
Target Start/End: Complemental strand, 7954966 - 7954523
Alignment:
| Q |
132 |
gcatgccaaatgagccaaagaccacgccgaatctttttattcctctcccaagcgatccaacataggcggtgattaaaaatattcggtcgagttaaaattt |
231 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||| || | || |||| | ||| ||| || ||| | | |
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|
| T |
7954966 |
gcatgccaaataagccaaaggccacgccgaatctttttattcctctcccacccattccaacacagacaaagaataaacagattgggtggaattattaaat |
7954867 |
T |
|
| Q |
232 |
tttactccaaccaattcattacttccctccaaacccttgaagccaccgagcaatgaaggaaaaggtgattcgatgtttccactccattatcacacaacac |
331 |
Q |
| |
|
| || |||||||| || | ||| || |||| || || || || |||| ||||||||| |||| |||||||| |||||||| ||||| |||||||||| |
|
|
| T |
7954866 |
tgtaatccaaccagtttaagactcccatccagactctcgacgcaaccgtgcaatgaagaaaaa--tgattcgacgtttccaccccattgccacacaacac |
7954769 |
T |
|
| Q |
332 |
acaaaccatcgaggcctccaaaggaaggacattcctcacatgaagatttacctttgttggaagacgatcaagcaacaacttccaagagaacgcgaccact |
431 |
Q |
| |
|
||||| | | || |||||||||||||| | |||| ||| ||||||| || | ||||||| ||||||||||| || |||||| |||||||| |||||| |
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|
| T |
7954768 |
acaaagcgtggaaacctccaaaggaagggcgctcctaacagcaagattttccctcgttggaatacgatcaagcagcagcttccacgagaacgctaccact |
7954669 |
T |
|
| Q |
432 |
ttcaaaggtgccgggcttttccacacttgtgaaaacactagtttctcctcttccctccataaatcttctatcaacaccaaacttaccaacttctcataag |
531 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | |||||| | ||||||| || ||||| ||||| || |||||||||| | | ||||||||||||| | |
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|
| T |
7954668 |
ttcaaaggtgcagggctattccacacttgcgcaaacacaaccctctcctcatcactccacaaatcatcattcaacaccaagccttccaacttctcatacg |
7954569 |
T |
|
| Q |
532 |
cggattttacctagaagcacccatcctcctccaacttccacctcca |
577 |
Q |
| |
|
||||||| ||| ||| |||| || ||||||||| |||||||||| |
|
|
| T |
7954568 |
cggatttaaccgtgaaatacccttcatcctccaacctccacctcca |
7954523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 674
Target Start/End: Complemental strand, 7953822 - 7953757
Alignment:
| Q |
609 |
aaactaatatatttgtgaccccatgaatttaatctccgatctaaaagatctaccaaaggttgccaa |
674 |
Q |
| |
|
||||||||| |||| | ||| |||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
7953822 |
aaactaataaatttattgccctatgaatttaatccccgatccaaaagatcaaccaaaggttgccaa |
7953757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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