View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_high_28 (Length: 238)
Name: NF19005_high_28
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37585062 - 37584842
Alignment:
| Q |
1 |
cgtccaacgaaatctgcaataggtccacttgttattgcaccaatcatggcaccgaaagtcaagatggagccaaacaaggagtactgcatgcattcattca |
100 |
Q |
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| T |
37585062 |
cgtccaacgaaatcggcaataggtccacttgttattgcgccaatcatcgcaccgaaagtcaagatggagccaaagaaggagtactgcatgcattcattca |
37584963 |
T |
|
| Q |
101 |
gcgaaaagcaaagaaagttacatcaaatccaagtctgattttcccgcactggaatcaattccattaagtaaaagttatacaaacatgttgagtaaatgat |
200 |
Q |
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| T |
37584962 |
gcgaaaagcaaagaaagttacatcaaatccaagtctgattttcccgcactggaatcaattccattaagtaaaagttatacaaacatgttgagtaaatgat |
37584863 |
T |
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| Q |
201 |
aatcatgcttcatgagtttgc |
221 |
Q |
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| T |
37584862 |
aatcatgcttcatgagtttgc |
37584842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37591510 - 37591745
Alignment:
| Q |
1 |
cgtccaacgaaatctgcaataggtccacttgttattgcaccaatcatggcaccgaaagtcaagatggagccaaacaaggagtac-------tgcatgcat |
93 |
Q |
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| T |
37591510 |
cgtccaacgaattcggcaataggtccactagttattgcaccaatcatcgcaccaaaagtcaagatggagccaaacaaggagtactgcattgtgcatacat |
37591609 |
T |
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| Q |
94 |
tcattcagcgaaaagcaaagaaagttacatcaaatccaagtctgattttc--------ccgcactggaatcaattccattaagtaaaagttatacaaaca |
185 |
Q |
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| T |
37591610 |
tcattcaacgaaaagcaaagaaaattacattaaatctaggtctgattttccagcactgctgcactgggatcaaatacgttatgtaaaaattatacaaaca |
37591709 |
T |
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| Q |
186 |
tgttgagtaaatgataatcatgcttcatgagtttgc |
221 |
Q |
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| T |
37591710 |
tgctaagcacatgataatcatgattcatgagtttgc |
37591745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 37462606 - 37462479
Alignment:
| Q |
3 |
tccaacgaaatctgcaataggtccacttgttattgcaccaatcatggcaccgaaagtcaagatggagccaaacaaggagtactgcatgcattcattcagc |
102 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||| ||||| || || ||||||||||||||||||||||||||||| | ||| || | |
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| T |
37462606 |
tccaacgaaatcagcaataggtccacttgttattgcgccaatcatcgcaccaaatgttaagatggagccaaacaaggagtactgcatttagtcaatccac |
37462507 |
T |
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| Q |
103 |
gaaaagcaaagaaagttacatcaaatcc |
130 |
Q |
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| T |
37462506 |
aaaaagcaaagaaaattacatcaaatcc |
37462479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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