View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_high_3 (Length: 521)
Name: NF19005_high_3
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 126 - 391
Target Start/End: Original strand, 34164237 - 34164501
Alignment:
| Q |
126 |
ccttggtgcggcaaaaggttgttgatgatttgttacggtgttgttgtttgattcgacgatgaagaagaaacccatggagagtgtgaatgatctgatccaa |
225 |
Q |
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| T |
34164237 |
ccttggtgcggtaaaaggtttttgatgatttgttacggtgttgttgtttgattcaacgatgaagaagaaacccatggagagtgtgaatgatctgatccaa |
34164336 |
T |
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| Q |
226 |
gagtttaagctccgcactctttggtgggctctctctattttcgccgtttcttatttcctcactcgtaagtttcactttttgttgttgttggaaatttgaa |
325 |
Q |
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| T |
34164337 |
gagtttaagctccgcactctttggtgggctctctctattttcgccgtttcttatttcctcactcgtaagtttcacttttt-ttgttgtttgaaatttgaa |
34164435 |
T |
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| Q |
326 |
ttattagcttaagtttcatatattttgcttgatgataggttctagcataagaccatagtgtgtgta |
391 |
Q |
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| T |
34164436 |
ttattagcttaagtttcatatattttgcttgatgataggttctagcataagaccatagtgtgtgta |
34164501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 34164125 - 34164203
Alignment:
| Q |
14 |
aatacaaagaatattccattaatattatttttctgctcgataattcaattcaattccaggtattacataccgtttcttc |
92 |
Q |
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| T |
34164125 |
aatacaaagaatattccattaatattatttttctgctcgataattcaattcaattccaggtattacatactgtttcttc |
34164203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 43383141 - 43383082
Alignment:
| Q |
440 |
aagacaaaataaccaaccc-acttatgtatgtatgtaagcggttacttcaacttccaatc |
498 |
Q |
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| T |
43383141 |
aagacaaaataaccaaccccacttatgcatgtatgtaagcggttacttcaacttccaatc |
43383082 |
T |
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