View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19005_high_35 (Length: 204)

Name: NF19005_high_35
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19005_high_35
NF19005_high_35
[»] chr2 (1 HSPs)
chr2 (73-175)||(15902141-15902243)
[»] chr8 (2 HSPs)
chr8 (73-175)||(32413779-32413881)
chr8 (73-175)||(39860803-39860905)
[»] chr4 (5 HSPs)
chr4 (73-175)||(2182451-2182553)
chr4 (73-175)||(19550978-19551080)
chr4 (71-174)||(38935129-38935232)
chr4 (81-160)||(5046420-5046499)
chr4 (100-165)||(38935663-38935728)
[»] chr3 (1 HSPs)
chr3 (73-175)||(21726788-21726890)
[»] chr5 (2 HSPs)
chr5 (115-177)||(636043-636105)
chr5 (134-175)||(29087945-29087986)
[»] scaffold0022 (1 HSPs)
scaffold0022 (68-137)||(148842-148911)
[»] chr7 (1 HSPs)
chr7 (137-177)||(14686149-14686189)
[»] chr1 (2 HSPs)
chr1 (137-177)||(7558467-7558507)
chr1 (68-160)||(25085112-25085204)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 15902243 - 15902141
Alignment:
Q  73 tagtgtgcgagtcacctcatgttagtaatttagggaataaatttagaccattagatcaattaaattaatggatgagatttggtgtcaatataaccgttga 172  Q
    ||||||||| |||||||||||||||| |||||||||||||||  | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  15902243 tagtgtgcgggtcacctcatgttagtgatttagggaataaatacataccattagatcaattaattcaatggatgagatttggtgtcaatataaccgttga 15902144  T
Q  173 cac 175  Q
    |||    
T  15902143 cac 15902141  T

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Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 32413881 - 32413779
Alignment:
Q  73 tagtgtgcgagtcacctcatgttagtaatttagggaataaatttagaccattagatcaattaaattaatggatgagatttggtgtcaatataaccgttga 172  Q
    ||||||||| ||||||||||||| || |||||||||||||||  | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  32413881 tagtgtgcgggtcacctcatgttcgtgatttagggaataaatacataccattagatcaattaattcaatggatgagatttggtgtcaatataaccgttga 32413782  T
Q  173 cac 175  Q
    |||    
T  32413781 cac 32413779  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 39860803 - 39860905
Alignment:
Q  73 tagtgtgcgagtcacctcatgttagtaatttagggaataaatttagaccattagatcaattaaattaatggatgagatttggtgtcaatataaccgttga 172  Q
    ||||||||| |||||||||||||||| |||||||||||||||  | ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||    
T  39860803 tagtgtgcgggtcacctcatgttagtgatttagggaataaatacataccattaaatcaattaattcaatggatgagatttggtgtcaatataaccgttga 39860902  T
Q  173 cac 175  Q
    |||    
T  39860903 cac 39860905  T

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Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 2182451 - 2182553
Alignment:
Q  73 tagtgtgcgagtcacctcatgttagtaatttagggaataaatttagaccattagatcaattaaattaatggatgagatttggtgtcaatataaccgttga 172  Q
    ||||||||| |||||||||||||||| |||||||||||||||  | | ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  2182451 tagtgtgcgggtcacctcatgttagtgatttagggaataaatacatatcattagatcaattaattcaatggatgagatttggtgtcaatataaccgttga 2182550  T
Q  173 cac 175  Q
    |||    
T  2182551 cac 2182553  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 19550978 - 19551080
Alignment:
Q  73 tagtgtgcgagtcacctcatgttagtaatttagggaataaatttagaccattagatcaattaaattaatggatgagatttggtgtcaatataaccgttga 172  Q
    ||||||||| ||||| |||| ||||| ||||||| |||||||  | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  19550978 tagtgtgcgggtcacgtcatcttagtgatttaggaaataaatacataccattagatcaattaattcaatggatgagatttggtgtcaatataaccgttga 19551077  T
Q  173 cac 175  Q
    |||    
T  19551078 cac 19551080  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 38935232 - 38935129
Alignment:
Q  71 actagtgtgcgagtcacctcatgttagtaatttagggaataaatttagaccattagatcaattaaattaatggatgagatttggtgtcaatataaccgtt 170  Q
    ||||||||| | ||||||| |||  ||| |||||||||||||||  | ||||||||||||| ||| ||||||||||||| ||||||| |||||||| |||    
T  38935232 actagtgtgtgggtcaccttatgccagtgatttagggaataaatacaaaccattagatcaaataatttaatggatgagaattggtgttaatataacagtt 38935133  T
Q  171 gaca 174  Q
    ||||    
T  38935132 gaca 38935129  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 5046420 - 5046499
Alignment:
Q  81 gagtcacctcatgttagtaatttagggaataaatttagaccattagatcaattaaattaatggatgagatttggtgtcaa 160  Q
    ||||||||||||||||| |||||| ||||||||  |   ||||||||| ||||||||  |||||| ||||||||||||||    
T  5046420 gagtcacctcatgttagcaatttaaggaataaacgtgtgccattagattaattaaatagatggattagatttggtgtcaa 5046499  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 38935663 - 38935728
Alignment:
Q  100 atttagggaataaatttagaccattagatcaattaaattaatggatgagatttggtgtcaatataa 165  Q
    ||||||||| |||||  | ||||||||||||||||  | |||| ||||||||| ||||||||||||    
T  38935663 atttagggagtaaatacaaaccattagatcaattagttcaatgaatgagatttagtgtcaatataa 38935728  T

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Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 21726890 - 21726788
Alignment:
Q  73 tagtgtgcgagtcacctcatgttagtaatttagggaataaatttagaccattagatcaattaaattaatggatgagatttggtgtcaatataaccgttga 172  Q
    ||||||||| |||||||||||||||| |||||||||||||||  | ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  21726890 tagtgtgcgggtcacctcatgttagtgatttagggaataaatacataccattagatcaattaattcaatggatgagatttgatgtcaatataaccgttga 21726791  T
Q  173 cac 175  Q
    |||    
T  21726790 cac 21726788  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 636043 - 636105
Alignment:
Q  115 ttagaccattagatcaattaaattaatggatgagatttggtgtcaatataaccgttgacactt 177  Q
    ||||| ||| ||||||||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  636043 ttagaacatcagatcaattaaatcaatgggtgagatttggtgtcaatataatcgttgacactt 636105  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 29087986 - 29087945
Alignment:
Q  134 aaattaatggatgagatttggtgtcaatataaccgttgacac 175  Q
    ||||||||||||||||||||||||||||  | ||||||||||    
T  29087986 aaattaatggatgagatttggtgtcaatgaatccgttgacac 29087945  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 148842 - 148911
Alignment:
Q  68 acaactagtgtgcgagtcacctcatgttagtaatttagggaataaatttagaccattagatcaattaaat 137  Q
    ||||||||| || |||||||||||  |||| |||||||||||||| |  | |||||||||| ||||||||    
T  148842 acaactagtatgagagtcacctcacattagcaatttagggaataattaaacaccattagattaattaaat 148911  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 14686189 - 14686149
Alignment:
Q  137 ttaatggatgagatttggtgtcaatataaccgttgacactt 177  Q
    |||||||||||||||||||||||| | | ||||||||||||    
T  14686189 ttaatggatgagatttggtgtcaacaaatccgttgacactt 14686149  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 7558507 - 7558467
Alignment:
Q  137 ttaatggatgagatttggtgtcaatataaccgttgacactt 177  Q
    |||||||||||||||||||||||| | | ||||||||||||    
T  7558507 ttaatggatgagatttggtgtcaacaaatccgttgacactt 7558467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 25085112 - 25085204
Alignment:
Q  68 acaactagtgtgcgagtcacctcatgttagtaatttagggaataaatttagaccattagatcaattaaattaatggatgagatttggtgtcaa 160  Q
    ||||||||| || || ||||||||  |||| |||||||||||||| |  | |||||||||| | ||||||  | |||| ||||||||||||||    
T  25085112 acaactagtatgagactcacctcacattagcaatttagggaataattaaacaccattagattagttaaatggacggatcagatttggtgtcaa 25085204  T

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