View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_low_13 (Length: 352)
Name: NF19005_low_13
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 45090448 - 45090228
Alignment:
| Q |
18 |
agaatgcacttgagcttgtcatccaatttttagtcatatcagggaagtgcctgtcaatcacatccttcaaagactctgttttgtttacccattcaaaacc |
117 |
Q |
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| T |
45090448 |
agaatgcacttgagcttgtcatccaatttttagtcatctcagggaagtgcctgtcaatcacatccttcaaagactctgttttgtttacccattcaaaacc |
45090349 |
T |
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| Q |
118 |
ttggtttgtgtatgtttttgagttgaaatttgttgtgaagaaacgatcagcttctagcctcctaaacatcataatcaccacataagattccaagccaaaa |
217 |
Q |
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| T |
45090348 |
ttggtttgtgtatgtttttgagttgaaatttgttgtgaagaaacgatcagcttctagcctcctaaacatcataatcaccacataagattccaaaccaaaa |
45090249 |
T |
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| Q |
218 |
taatcaaattttatttgcata |
238 |
Q |
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|||||||||||||||| |||| |
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| T |
45090248 |
taatcaaattttattttcata |
45090228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 262 - 345
Target Start/End: Complemental strand, 45090216 - 45090133
Alignment:
| Q |
262 |
gtgcttaaaacttaccttgaagccatgatcacaaagataaagaaagcagtctcacttatagcaaacccttttatcttcatctca |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
45090216 |
gtgcttaaaacttaccttgaagccatgatcacaaagataaagaaagcagtctcacttatagcaaaccctttgatcttcttctca |
45090133 |
T |
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