View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19005_low_16 (Length: 326)
Name: NF19005_low_16
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 35430932 - 35430637
Alignment:
| Q |
8 |
aagcaaaggaaaatttggaaaagttcaagagagcaaaaatttaaatgaacaaactgaaaattccaatcttctaaatagcagtgttttagttaaaacaatt |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35430932 |
aagcaaaggaaaatttggaaa-gttcaagagagcaaaaatttaattgaacaaactgaaaattccaatcttctaaatagcagtgttttagttaaaacaatt |
35430834 |
T |
|
| Q |
108 |
catgctaaagaatgacatacataaaaactaaagaacgtacgtcaaagaaatttaatgaacatgtaaagaattatcaaaagcaccgaccaactaatctaat |
207 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
35430833 |
catgctaacgaatgacatacataaaaactaaagaacgtacgtcaaagaaatttaatgaacatgtaaagaattaccagaagcaccgaccaactaatctaat |
35430734 |
T |
|
| Q |
208 |
agagaacccttactgcaccttgcagaccaaaattttgtagcccgtaggaattaatgctacgctagacaaacaatttcattgttgtaaataacattcatta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35430733 |
--agaacccttactgcaccttgcagaccaaaatttt-------gtaggaattaatgctacgctagacaaacaatttcattgttgtaaataacattcatta |
35430643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 30426340 - 30426416
Alignment:
| Q |
12 |
aaaggaaaatttggaaaagttcaagagagcaaaaa-tttaaatgaacaaactgaaaattccaatcttctaaatagca |
87 |
Q |
| |
|
||||||||||| | ||||| |||| |||| |||| ||||||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
30426340 |
aaaggaaaattggaaaaaggtcaatggagccaaaactttaaataaacaaattgaaaattcaaatcttctaaatagca |
30426416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University