View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_low_17 (Length: 307)
Name: NF19005_low_17
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_17 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 3399172 - 3398884
Alignment:
| Q |
18 |
tgatcctgaatcacataatccatcttcaaatgtattttccccttatacgtacagggagagtaaagcaaccttcaccatcaaacctgacttcagccggtac |
117 |
Q |
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| T |
3399172 |
tgatcctgaatcaaataatccatcttcaa-tgtattttccccttatacgtacagggagagtaaagcaaccttcaccatcaaacctgactacagccggtac |
3399074 |
T |
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| Q |
118 |
ctcgtacgtgtgatgaaattcgctagaaagtgagatgaattcttcctcagatagattagcatttgtctttaagagctcttgaagaaacttgacgcagcat |
217 |
Q |
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| T |
3399073 |
ctcgtacgtgtgatgaaattcgctagaaagtgagatgaattcttcctcagatagattagcatttgtctttaagagctcttgaagaaacttgatgcagcat |
3398974 |
T |
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| Q |
218 |
ggaatctgttcgaccgtttctgtgattggcatgttcactttgtatcctttcaaaatatggtgcagagcattgaactttggcggtacttct |
307 |
Q |
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| T |
3398973 |
ggaatctgttcgaccgtttctgtgattggcatgttcactttgtatcctttcaaaatatggtgcagagcattgaactttggcggtacttct |
3398884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 16228200 - 16228335
Alignment:
| Q |
74 |
agagtaaagcaaccttcaccatcaaacctgacttcagccggtacctcgtacgtgtgatgaaattcgctagaaagtgagatgaattcttcctcagatagat |
173 |
Q |
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| T |
16228200 |
agagtaaagcatctttcaccatcgaatctgacttcagccggtaacccgtacatgttatgacattctctagttagtgatatgagttcttcttcagatagat |
16228299 |
T |
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| Q |
174 |
tagcatttgtctttaagagctcttgaagaaacttga |
209 |
Q |
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| T |
16228300 |
cagcattggtcttcaattgttcttgaagaaacttga |
16228335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 24318460 - 24318315
Alignment:
| Q |
74 |
agagtaaagcaaccttcaccatcaaacctgacttcagccggtacctcgtacgtgtgatgaaattcgctagaaagtgagatgaattcttcctcagatagat |
173 |
Q |
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| T |
24318460 |
agagtaaagcatccttcaccatcaaacctgacttcagccaatacctcatacgtatgatgacactcgctggttagtgatatgagttcttcttcagataggt |
24318361 |
T |
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| Q |
174 |
tagcatttgtctttaagagctcttgaagaaacttgacgcagcatgg |
219 |
Q |
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| T |
24318360 |
cgacatgttttttcaagagttcttgaagaaacatgatgcagcatgg |
24318315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 17430470 - 17430544
Alignment:
| Q |
146 |
agtgagatgaattcttcctcagatagattagcatttgtctttaagagctcttgaagaaacttgacgcagcatgga |
220 |
Q |
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| T |
17430470 |
agtgatatgagttcttcctcggatagatcggcattaatcttcaatagttcttgaagaaacttgatgcagcatgga |
17430544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 233098 - 233268
Alignment:
| Q |
76 |
agtaaagcaaccttcaccatcaaacctgacttcagccggtacctcgtacgtgtgatgaaattcgctagaaagtgagatgaattcttcctcagatagatta |
175 |
Q |
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| T |
233098 |
agtaaagcatcattcaccataaaacctgactttggccggtacctcgtatgtgccctcacattcactagtcattgacatgagttcttcctccgatagattg |
233197 |
T |
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| Q |
176 |
gcatttgtctttaagagctcttgaagaaacttgacgcagcatggaatctgttcgaccgtttctgtgattgg |
246 |
Q |
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| T |
233198 |
gcatcagtcttcaataattcttgaagaaacttgatgcaacatggactttgtgcgaccatttctttgattgg |
233268 |
T |
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