View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19005_low_19 (Length: 278)
Name: NF19005_low_19
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 7052287 - 7052040
Alignment:
| Q |
17 |
ataaacaatacaattatttctaagatatcattgtaatactaattaaaatattacaaacttgtgaaggtgcatgacagtcagtgaggaaaagaacgaaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7052287 |
ataaacaatacaattatttctaagatatcattgtaatactaattaaaatattacaaacttgtgaaggtgcatgacagtcagtgaggaaaagaacgaaatt |
7052188 |
T |
|
| Q |
117 |
gggaatcttattatatgaaacatcatgtgcgtttatgtgttcaatgagtagaaaaggatttcactttcaaaggtgtggcttaatcaacggaatttgttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7052187 |
gggaatcttattatatgaaacatcatgtgcgtttatgtgttcaatgagtagaaaaggatttcactttcaaaggtgtggcttaatcaacggaatttgttgt |
7052088 |
T |
|
| Q |
217 |
cgttcttttcaaaggttggctccactgaaccatgataattagtataat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7052087 |
cgttcttttcaaaggttggctccactgaaccatgataattagtataat |
7052040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 16790619 - 16790665
Alignment:
| Q |
218 |
gttcttttcaaaggttggctccactgaaccatgataattagtataat |
264 |
Q |
| |
|
||||||| |||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
16790619 |
gttctttccaaaggttagttccactaaaccatgataattagtataat |
16790665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University