View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19005_low_22 (Length: 266)

Name: NF19005_low_22
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19005_low_22
NF19005_low_22
[»] chr5 (2 HSPs)
chr5 (13-250)||(41485044-41485276)
chr5 (68-238)||(408110-408272)
[»] chr2 (3 HSPs)
chr2 (63-134)||(41454863-41454934)
chr2 (63-177)||(13693771-13693885)
chr2 (204-250)||(41454407-41454453)
[»] chr6 (4 HSPs)
chr6 (67-132)||(16358836-16358901)
chr6 (67-132)||(18849537-18849602)
chr6 (106-152)||(26141630-26141676)
chr6 (101-150)||(25509531-25509580)
[»] chr4 (4 HSPs)
chr4 (63-250)||(16422416-16422602)
chr4 (78-149)||(44037205-44037276)
chr4 (68-152)||(6019347-6019429)
chr4 (63-133)||(41389213-41389283)
[»] chr8 (2 HSPs)
chr8 (62-152)||(9035191-9035281)
chr8 (67-132)||(3372190-3372255)
[»] chr3 (1 HSPs)
chr3 (85-152)||(26641424-26641491)
[»] scaffold0025 (1 HSPs)
scaffold0025 (96-162)||(36847-36913)
[»] chr7 (2 HSPs)
chr7 (67-149)||(33164334-33164416)
chr7 (63-119)||(28195303-28195359)
[»] scaffold0215 (1 HSPs)
scaffold0215 (67-132)||(24844-24909)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 41485044 - 41485276
Alignment:
Q  13 aaaatataacatggaagagagttaaattcttcaattcacgacnnnnnnnt-acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaa 111  Q
    ||||||||||||| |||| |||||||||||||||||||||||       | ||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  41485044 aaaatataacatgaaagaaagttaaattcttcaattcacgacaaaaaaatcacaatagaagtttacaaagtcaaaatttaaagttggttacaataacaaa 41485143  T
Q  112 gaaactcaagcgcacaaataatattaaattgtcatattaatataaaggagagtgccatagatttcattcagagtacaatatatataatgaggaaaaatga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||| |||    
T  41485144 gaaactcaagcgcacaaataatattaaattgtcatattaatataaaggagagtgccatagatttcattcagagtaca------ataatgaggaaaattga 41485237  T
Q  212 agtgccaccaataccgtacgcgtacccgatacggatact 250  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  41485238 agtgccaccaataccgtacgcgtacccggtacgggtact 41485276  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 408272 - 408110
Alignment:
Q  68 agaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaatataaaggagagtgcc 167  Q
    |||| |||| |||||| ||||||| ||| |||||||  ||||||||||||||| ||||||||||||| || |||||  ||||||| || | ||||  |||    
T  408272 agaagtttaaaaagtccaaatttagagtcggttacaacaacaaagaaactcaaacgcacaaataatagtatattgt--tattaatgtataagagaaagcc 408175  T
Q  168 atagatttcattcagagtacaatatatataatgaggaaaaatgaagtgccaccaataccgtacgcgtaccc 238  Q
    | | |||||| ||| | ||||      |||||||| ||||||| ||| |||| | ||||||||||||||||    
T  408174 acaaatttcactcacaataca------ataatgagcaaaaatggagtaccacgagtaccgtacgcgtaccc 408110  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 41454934 - 41454863
Alignment:
Q  63 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataata 134  Q
    ||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||||    
T  41454934 acaatagaagtttaaaaagtcgaaatttagagttggttacaataacaaagaaactcaaaggcacaaataata 41454863  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 13693771 - 13693885
Alignment:
Q  63 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaatataaaggaga 162  Q
    |||||||||  ||| |||||| ||||||| |||||||||||  ||||||||||| ||| ||| ||||||| |||| |||||| ||||||| || ||||||    
T  13693771 acaatagaagattaaaaagtcaaaatttagagttggttacaacaacaaagaaacgcaaacgcgcaaataacattatattgtcctattaatgtataggaga 13693870  T
Q  163 gtgccatagatttca 177  Q
      |||||| ||||||    
T  13693871 aagccataaatttca 13693885  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 41454453 - 41454407
Alignment:
Q  204 aaaaatgaagtgccaccaataccgtacgcgtacccgatacggatact 250  Q
    ||||||||||| |||| | ||||||||||||||||||||||| ||||    
T  41454453 aaaaatgaagtaccacgagtaccgtacgcgtacccgatacgggtact 41454407  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 16358836 - 16358901
Alignment:
Q  67 tagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataa 132  Q
    ||||| |||| |||||||||||||| |||||||||||  ||||||||||||||| |||||||||||    
T  16358836 tagaagtttaaaaagtcgaaatttagagttggttacaacaacaaagaaactcaaacgcacaaataa 16358901  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 18849602 - 18849537
Alignment:
Q  67 tagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataa 132  Q
    ||||| |||| ||| |||||||||| |||||||||||  |||||||||||||||  ||||||||||    
T  18849602 tagaagtttaaaaattcgaaatttagagttggttacaacaacaaagaaactcaaatgcacaaataa 18849537  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 26141630 - 26141676
Alignment:
Q  106 aacaaagaaactcaagcgcacaaataatattaaattgtcatattaat 152  Q
    |||||||||||||||  ||||||||||||||| | ||||||||||||    
T  26141630 aacaaagaaactcaaatgcacaaataatattatagtgtcatattaat 26141676  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 25509531 - 25509580
Alignment:
Q  101 acagtaacaaagaaactcaagcgcacaaataatattaaattgtcatatta 150  Q
    |||| |||||||||||||||  ||||||||||||||| | ||||||||||    
T  25509531 acagcaacaaagaaactcaaatgcacaaataatattacagtgtcatatta 25509580  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 16422416 - 16422602
Alignment:
Q  63 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaata-----atattaaattgtcatattaatataaa 157  Q
    ||||||||| |||| |||||| ||||||| ||||||||||||||||||| ||||| ||   ||||||||     |||||| |||||||||||| | || |    
T  16422416 acaatagaagtttaaaaagtcaaaatttagagttggttacagtaacaaataaacttaaatacacaaataatattatattatattgtcatattagtgtata 16422515  T
Q  158 ggagagtgccatagatttcattcagagtacaatatatataatgaggaaaaatgaagtgccaccaataccgtacgcgtacccgatacggatact 250  Q
     |||| || |||| |||||| ||| | ||||      |||||||| ||||||||||| |||| | ||| ||||||||| ||||||||| ||||    
T  16422516 agagaatgtcataaatttcactcacaataca------ataatgagaaaaaatgaagtaccacgagtactgtacgcgtatccgatacgggtact 16422602  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 44037276 - 44037205
Alignment:
Q  78 aaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatatt 149  Q
    |||||||||||||| |||||||||||  ||||||||||||||| | ||||| |||||||  |||||||||||    
T  44037276 aaagtcgaaatttagagttggttacaacaacaaagaaactcaaacacacaagtaatattgtattgtcatatt 44037205  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 6019347 - 6019429
Alignment:
Q  68 agaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaat 152  Q
    ||||||||| |||||||||||||| |||||||||||  |||  |||||||||| |||| |||||||| || ||||| ||||||||    
T  6019347 agaaatttaaaaagtcgaaatttagagttggttacaacaac--agaaactcaaacgcataaataatagtatattgttatattaat 6019429  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 41389213 - 41389283
Alignment:
Q  63 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataat 133  Q
    |||||| ||||||| |||||||||| | | ||||||||| |  ||||||||||||||| |||| |||||||    
T  41389213 acaataaaaatttaaaaagtcgaaactaagagttggttataacaacaaagaaactcaaacgcataaataat 41389283  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 9035281 - 9035191
Alignment:
Q  62 tacaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaat 152  Q
    |||| ||||| ||||  ||||||||||||| |||||||||||  ||||||||||| ||| |  |||||||| |||| ||||||||||||||    
T  9035281 tacattagaagtttaagaagtcgaaatttagagttggttacaacaacaaagaaacgcaaacatacaaataacattatattgtcatattaat 9035191  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 3372190 - 3372255
Alignment:
Q  67 tagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataa 132  Q
    ||||| |||| ||| |||||||||| |||||||||||  || ||||||||||||  ||||||||||    
T  3372190 tagaagtttaaaaattcgaaatttagagttggttacaacaataaagaaactcaaatgcacaaataa 3372255  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 26641491 - 26641424
Alignment:
Q  85 aaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaat 152  Q
    ||||||| |||||||||||  |||||| |||||||| ||||||||||| |||| |||| |||||||||    
T  26641491 aaatttagagttggttacaacaacaaaaaaactcaaacgcacaaataacattatattgccatattaat 26641424  T

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Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 36913 - 36847
Alignment:
Q  96 tggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaatataaaggaga 162  Q
    ||||||||  ||||||||||||||| ||||||||||| |||| ||| |||||||||| || ||||||    
T  36913 tggttacaacaacaaagaaactcaaacgcacaaataacattatattatcatattaatgtataggaga 36847  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 33164334 - 33164416
Alignment:
Q  67 tagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatatt 149  Q
    ||||| |||| |||||||||||||| |||||||||||  ||||| ||||||||| | ||||| |||||||   ||||||||||    
T  33164334 tagaagtttaaaaagtcgaaatttagagttggttacaacaacaacgaaactcaaacacacaagtaatattgttttgtcatatt 33164416  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 28195359 - 28195303
Alignment:
Q  63 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactca 119  Q
    ||||||||| |||| |||||||||| ||| |||||||||||  |||||| |||||||    
T  28195359 acaatagaagtttaaaaagtcgaaaattagagttggttacaacaacaaaaaaactca 28195303  T

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Target: scaffold0215 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 24844 - 24909
Alignment:
Q  67 tagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataa 132  Q
    ||||| |||| ||| |||||||||| |||||||||||  ||||||||||||||  |||||||||||    
T  24844 tagaagtttaaaaattcgaaatttagagttggttacaacaacaaagaaactcacacgcacaaataa 24909  T

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