View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_low_29 (Length: 238)
Name: NF19005_low_29
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_29 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 16299797 - 16300019
Alignment:
| Q |
16 |
catctctgacatgagtaatggaggtatgtttttctttcaaaccatccaaaaccaccaagttcaagatatgtgaacaacacctcatatggaaataagaccc |
115 |
Q |
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| T |
16299797 |
catctctgacacgagtaatggaggtatgtttttctttcaaaccatccaaaaccaccaagttcaagatatgtgaacaacacctcatatggaaataagaccc |
16299896 |
T |
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| Q |
116 |
atcccccatcagcccattcattgttttaatcnnnnnnnncaaatatgtcacggctacatcattagctgatgcattatcaacagttacagaggacacacat |
215 |
Q |
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| T |
16299897 |
atcccccatcagcccattcattgttttaatcttttttttcaaatatgtcacggctacatcattagctgatgcattatcaacagttacagatgacacacat |
16299996 |
T |
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| Q |
216 |
ctaatcccccaatcccttaacac |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
16299997 |
ctaatcccccaatcccttaacac |
16300019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 22897294 - 22897516
Alignment:
| Q |
16 |
catctctgacatgagtaatggaggtatgtttttctttcaaaccatccaaaaccaccaagttcaagatatgtgaacaacacctcatatggaaataagaccc |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22897294 |
catctctgacacgagtaatggaggtatgtttttctttcaaaccatccaaaaccaccaagttcaagatatgtgaacaacacctcatatggaaataagaccc |
22897393 |
T |
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| Q |
116 |
atcccccatcagcccattcattgttttaatcnnnnnnnncaaatatgtcacggctacatcattagctgatgcattatcaacagttacagaggacacacat |
215 |
Q |
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| T |
22897394 |
atcccccatcagcccattcattgttttaatcttttttttcaaatatgtcacggctacatcattagctgatgcattatcaacagttacagatgacacacat |
22897493 |
T |
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| Q |
216 |
ctaatcccccaatcccttaacac |
238 |
Q |
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| T |
22897494 |
ctaatcccccaatcccttaacac |
22897516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 15978057 - 15978145
Alignment:
| Q |
40 |
tatgtttttctttcaaaccatccaaaaccaccaagttcaagatatgtgaacaacacctcatatggaaataagacccatcccccatcagc |
128 |
Q |
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||||||| | |||||||||||||||||||||||| |||||||| || |||||||| ||||| | ||| ||||| ||| || ||||||| |
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| T |
15978057 |
tatgtttatatttcaaaccatccaaaaccaccaaattcaagatgtgggaacaacaggtcatacgaaaacaagacacatgcctcatcagc |
15978145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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