View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_low_31 (Length: 231)
Name: NF19005_low_31
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 3828970 - 3828796
Alignment:
| Q |
17 |
aatatatggtgggctaggagtgaagggtttaaaactcagtggaggttattagtggggggatttgttatggaaaagggtgttgatggcaaggtatgaaaaa |
116 |
Q |
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| T |
3828970 |
aatatacggtgggctaggagtgaagggtttaaaactcagtggaggttattagtggggggatttgttatggaaaagggtgttgatggcaaggtatgaaaaa |
3828871 |
T |
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| Q |
117 |
gggatagttac----taacacagatttatcaaattttaatagaccgaacgtagtttctttatggtggaaggatgt |
187 |
Q |
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| T |
3828870 |
gagatagttactaattaacacggatttatcaaattttaatagaccgaatgtggtttctttatggtggaaggatgt |
3828796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 3868021 - 3867854
Alignment:
| Q |
17 |
aatatatggtgggctaggagtgaagggtttaaaactcagtggaggttattagtggggggatttgttatggaaaagggtgttgatggcaaggtatgaaaaa |
116 |
Q |
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| T |
3868021 |
aatatatgatgggctaggagtgaagggtataaaacacagtggaggttattactggggg-atttgttatggaaaagggtgttgatggcaaggtatgaaaat |
3867923 |
T |
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| Q |
117 |
gggatagttactaacacagatttatcaaattttaatagaccgaacgtagtttctttatggtggaaggat |
185 |
Q |
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| T |
3867922 |
gagataattactaacacggatttatcaacttttaatagaccgaatgtagcttctttatggtggaaggat |
3867854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 3861956 - 3861824
Alignment:
| Q |
54 |
agtggaggttattagtgg--ggggatttgttatggaaaagggtgttgatggcaaggtatgaaaaagggatagttactaacacagatttatcaaattttaa |
151 |
Q |
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| T |
3861956 |
agtggaggttattagtggatggggacttgttatggaaaacggtgtttatggacaggtgtggaattgagatagttaccaaccgagatttatc---ttttaa |
3861860 |
T |
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| Q |
152 |
ta-gaccgaacgtagtttctttatggtggaaggatg |
186 |
Q |
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| T |
3861859 |
taagaccgaatgtggtttctttatggtggagggatg |
3861824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 3862016 - 3861980
Alignment:
| Q |
17 |
aatatatggtgggctaggagtgaagggtttaaaactc |
53 |
Q |
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| T |
3862016 |
aatatatggtgggccaggagtgaaggatttaaaactc |
3861980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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