View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19005_low_32 (Length: 229)

Name: NF19005_low_32
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19005_low_32
NF19005_low_32
[»] chr1 (3 HSPs)
chr1 (9-213)||(24161687-24161891)
chr1 (9-45)||(29697596-29697632)
chr1 (9-43)||(44506271-44506305)
[»] chr4 (4 HSPs)
chr4 (9-213)||(33730729-33730933)
chr4 (9-213)||(11035716-11035920)
chr4 (9-43)||(5527330-5527364)
chr4 (9-45)||(42574978-42575014)
[»] chr5 (2 HSPs)
chr5 (9-213)||(42773175-42773383)
chr5 (9-45)||(28257239-28257275)
[»] chr2 (2 HSPs)
chr2 (9-117)||(19900365-19900473)
chr2 (11-115)||(27340299-27340403)
[»] scaffold0086 (1 HSPs)
scaffold0086 (17-117)||(49330-49430)
[»] chr8 (3 HSPs)
chr8 (9-94)||(23637305-23637390)
chr8 (9-92)||(23637428-23637511)
chr8 (9-41)||(24447175-24447207)
[»] chr6 (1 HSPs)
chr6 (9-45)||(19708613-19708649)
[»] chr3 (1 HSPs)
chr3 (9-45)||(51138185-51138221)
[»] chr7 (1 HSPs)
chr7 (9-43)||(20654309-20654343)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 24161687 - 24161891
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcgatcgtatacgatgcatcccatccatgcaaatataattgtggaaaaatatgatcaataagagttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24161687 acatcatcatttgtagatgtaattatggctctttcgatcgtatacggtgcatcccatccatgcaaatataattgtggaaaaatatgatcaataagagttt 24161786  T
Q  109 gtattgacttttctgcttcccatggtaatgcaatttgaggaggcatccttaccatatcattgggtttagtaggttcaacactgtcaccaattcgcataat 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24161787 gtattgacttttcggcttcccatggtaatgcaatttgaggaggcatccttaccatatcattgggtttagtaggttcaacactgtcaccaattcgcataat 24161886  T
Q  209 aaatt 213  Q
    |||||    
T  24161887 aaatt 24161891  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 29697596 - 29697632
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcga 45  Q
    |||||||||||||||| ||||||||||||||||||||    
T  29697596 acatcatcatttgtaggtgtaattatggctctttcga 29697632  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 44506305 - 44506271
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttc 43  Q
    |||||||||||||||| ||||||||||||||||||    
T  44506305 acatcatcatttgtaggtgtaattatggctctttc 44506271  T

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Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 33730933 - 33730729
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcgatcgtatacgatgcatcccatccatgcaaatataattgtggaaaaatatgatcaataagagttt 108  Q
    |||||||||||||||  |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33730933 acatcatcatttgtaagtgtaattatggctctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatgatcaataagagttt 33730834  T
Q  109 gtattgacttttctgcttcccatggtaatgcaatttgaggaggcatccttaccatatcattgggtttagtaggttcaacactgtcaccaattcgcataat 208  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||     
T  33730833 gtattgactgttctccttcccatggtaatgcaatttgatgaggtatcctcaccatagcattgagtttggtaggttcaacactgtcaccaattcgcataag 33730734  T
Q  209 aaatt 213  Q
    |||||    
T  33730733 aaatt 33730729  T

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Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 11035716 - 11035920
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcgatcgtatacgatgcatcccatccatgcaaatataattgtggaaaaatatgatcaataagagttt 108  Q
    ||||| |||||||||| |||||||||||||| ||||| | |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  11035716 acatcgtcatttgtaggtgtaattatggctcgttcgaccatatatgatgcatctcatccatgcaaatctaattgtggaaaaatatgatcaataagagttt 11035815  T
Q  109 gtattgacttttctgcttcccatggtaatgcaatttgaggaggcatccttaccatatcattgggtttagtaggttcaacactgtcaccaattcgcataat 208  Q
    ||||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||| |||||     
T  11035816 gtattgactgttctccttcccatgggaatgcaatttgaggaggtatcctcaccatatcattgggtttggtaggttcaacactatcaccaattcacataag 11035915  T
Q  209 aaatt 213  Q
    |||||    
T  11035916 aaatt 11035920  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 5527364 - 5527330
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttc 43  Q
    |||||||||||||||| ||||||||||||||||||    
T  5527364 acatcatcatttgtaggtgtaattatggctctttc 5527330  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 42574978 - 42575014
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcga 45  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  42574978 acatcatcatttataggtgtaattatggctctttcga 42575014  T

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Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 42773175 - 42773383
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcgatcg----tatacgatgcatcccatccatgcaaatataattgtggaaaaatatgatcaataaga 104  Q
    |||||||||||||||| ||||||||||||| ||| ||  |    |||| |||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  42773175 acatcatcatttgtaggtgtaattatggctattttgacagaccatatatgatgcatctcatctatgcaaatctaattgtggaaaaatatgatcaataaga 42773274  T
Q  105 gtttgtattgacttttctgcttcccatggtaatgcaatttgaggaggcatccttaccatatcattgggtttagtaggttcaacactgtcaccaattcgca 204  Q
    ||||||||||||  || | ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||    
T  42773275 gtttgtattgaccgttatccttcccatggtaacgcaatttgaggaggtatcctcaccatatcattgggtttggtaggttcaacaccgtcaccaattcaca 42773374  T
Q  205 taataaatt 213  Q
    ||| |||||    
T  42773375 taagaaatt 42773383  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 28257239 - 28257275
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcga 45  Q
    |||||||||||||||| ||||||||||||||||||||    
T  28257239 acatcatcatttgtaggtgtaattatggctctttcga 28257275  T

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Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 19900365 - 19900473
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcgatcgtatacgatgcatcccatccatgcaaatataattgtggaaaaatatgatcaataagagttt 108  Q
    |||||||||||||||| |||||||||||||||||||| | ||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  19900365 acatcatcatttgtaggtgtaattatggctctttcgaccatatacaatgcatctcatccattcaaatctaattgtggaaaaatatgatcaataagagttt 19900464  T
Q  109 gtattgact 117  Q
    | |||||||    
T  19900465 gcattgact 19900473  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 27340403 - 27340299
Alignment:
Q  11 atcatcatttgtagatgtaattatggctctttcgatcgtatacgatgcatcccatccatgcaaatataattgtggaaaaatatgatcaataagagtttgt 110  Q
    ||||||||||| || ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  27340403 atcatcatttgcaggtgtaattatggctcttttgaccatatacgatgcatcccatccatgcaaatctaattatggaaaaatatgatcaataagagtttgt 27340304  T
Q  111 attga 115  Q
    |||||    
T  27340303 attga 27340299  T

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Target: scaffold0086 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 49430 - 49330
Alignment:
Q  17 atttgtagatgtaattatggctctttcgatcgtatacgatgcatcccatccatgcaaatataattgtggaaaaatatgatcaataagagtttgtattgac 116  Q
    |||||||| ||||||||||||||||||||   |||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  49430 atttgtaggtgtaattatggctctttcgactatatacgatgcattccatccatgcaaatcaaattgtggaaaaatatgatcaataagagtttgtattgac 49331  T
Q  117 t 117  Q
    |    
T  49330 t 49330  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 23637305 - 23637390
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcgatcgtatacgatgcatcccatccatgcaaatataattgtggaaaaatatg 94  Q
    |||||||||||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||||||||||    
T  23637305 acatcatcatttgtaggtgtaattatggctctttcgaccatatatgatgcatcccatccatgcaaatctaattgtggaaaaatatg 23637390  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 23637511 - 23637428
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcgatcgtatacgatgcatcccatccatgcaaatataattgtggaaaaata 92  Q
    |||||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  23637511 acatcatcatttgtaggtttagttatggctctttcgatcatatacgatgcatcccatccatgcaaatctaattgtggaaaaata 23637428  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 24447207 - 24447175
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctt 41  Q
    |||||||||||||||| ||||||||||||||||    
T  24447207 acatcatcatttgtaggtgtaattatggctctt 24447175  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 19708613 - 19708649
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcga 45  Q
    |||||||||||||||| ||||||||||||||||||||    
T  19708613 acatcatcatttgtaggtgtaattatggctctttcga 19708649  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 51138185 - 51138221
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttcga 45  Q
    |||||||||||||||| ||||||||||||||||||||    
T  51138185 acatcatcatttgtaggtgtaattatggctctttcga 51138221  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 20654309 - 20654343
Alignment:
Q  9 acatcatcatttgtagatgtaattatggctctttc 43  Q
    |||||||||||||||| ||||||||||||||||||    
T  20654309 acatcatcatttgtaggtgtaattatggctctttc 20654343  T

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