View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_low_33 (Length: 224)
Name: NF19005_low_33
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 41596920 - 41597133
Alignment:
| Q |
1 |
tcacctaatcaacaccctcttgatgttcttgagattcctaatagcagttgttgtgttactactgattctggtaatagttctagttctaatgagttaaagc |
100 |
Q |
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| T |
41596920 |
tcacctaatcaacaccctcttgatgttcttgagattcctaatagcacttgttgtgttactactgattctggtaatagttctagttctaatgagttaaagc |
41597019 |
T |
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| Q |
101 |
ctctttcacctgatacaccagtttctggtggtgattctggttttaattcagtgaagtctcaatttattgttccaaatcatggtttgaatttgagtaatag |
200 |
Q |
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| T |
41597020 |
ctctttcacctgatacaccagtttctggtggtgattctggttttaattcagtgaagtctcaatttattgttccaaatcatggtttgaatttgagtaatag |
41597119 |
T |
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| Q |
201 |
taatattagtgatg |
214 |
Q |
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|||||||||||||| |
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| T |
41597120 |
taatattagtgatg |
41597133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 27326182 - 27326226
Alignment:
| Q |
2 |
cacctaatcaacaccctcttgatgttcttgagattcctaatagca |
46 |
Q |
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|||||||| |||||||||| |||||||||||||||||| ||||| |
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| T |
27326182 |
cacctaattcacaccctcttcatgttcttgagattcctagtagca |
27326226 |
T |
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