View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_low_4 (Length: 501)
Name: NF19005_low_4
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 21 - 427
Target Start/End: Complemental strand, 47075460 - 47075054
Alignment:
| Q |
21 |
tagaggaacacggggctacatggctccagaatggaacatgaacgtgccaatatcacttaaggaagatgtttatagctatggaataatgttgtgtgaaatt |
120 |
Q |
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| T |
47075460 |
tagagggacacggggctacatggctccagaatggaacatgaacgtgccaatatcacttaaggcagatgtttatagctatggaataatgttgtttgaaatt |
47075361 |
T |
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| Q |
121 |
ttatgttgcagaagaaacctagatgttaatgtgttggaacctgaggagattattctctctggttgggcttataagtgccttgttgcgggagaggtgaata |
220 |
Q |
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| T |
47075360 |
ttatgttgcagaagaaacctagatgttaatgtgttggaacctgaggagattcttctctctggttgggcttataagtgccttgttgcgggacaggtgaata |
47075261 |
T |
|
| Q |
221 |
atcttgttccttgggaagtcattgataataatgtcatggaaaatatggttaaagtggcactttggtgtatccaagatgacccttttctcaggccaacgat |
320 |
Q |
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| T |
47075260 |
atcttgttccttgggaagtcattgataataatgtcatggaaaatatggttaaagtggcactttggtgtatccaagatgacccttttctcaggccaacgat |
47075161 |
T |
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| Q |
321 |
gaagggtgtggtgttgatgttagaaggagttactgatatagcaattcctccttgtccagattccggttatgcataaaagtaactgtttcagctgttcctc |
420 |
Q |
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| T |
47075160 |
gaagggtgtggtgttgatgttagaaggagttactgatatagcaattcctccttgtccagattccggttatgcataaaagtaactgtttcagctgttcctc |
47075061 |
T |
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| Q |
421 |
atatggc |
427 |
Q |
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| T |
47075060 |
atgtggc |
47075054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 37 - 383
Target Start/End: Original strand, 47068886 - 47069232
Alignment:
| Q |
37 |
tacatggctccagaatggaacatgaacgtgccaatatcacttaaggaagatgtttatagctatggaataatgttgtgtgaaattttatgttgcagaagaa |
136 |
Q |
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| T |
47068886 |
tacatggccccggagtggaacaagaacgtggcaatatcagtgaaaacagatgtttatagctatggaatagtgctgttggaaatcttatgttgcagaagaa |
47068985 |
T |
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| Q |
137 |
acctagatgttaatgtgttggaacctgaggagattattctctctggttgggcttataagtgccttgttgcgggagaggtgaataatcttgttccttggga |
236 |
Q |
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| T |
47068986 |
acctagatgttaatgtgttggaacctgaggagattcttcttgctggttggacttataagtgctttattgcaggagacgtaaacaagcttgttccttcaga |
47069085 |
T |
|
| Q |
237 |
agtcattgataataatgtcatggaaaatatggttaaagtggcactttggtgtatccaagatgacccttttctcaggccaacgatgaagggtgtggtgttg |
336 |
Q |
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| T |
47069086 |
agccattgataaaaatgtcatggaaaatatggttaaggtggcactttggtgtatccaagatgacccttttctcaggccaacaatgaagggtgtggtgttg |
47069185 |
T |
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| Q |
337 |
atgttagaaggagttactgatatagcaattcctccttgtccagattc |
383 |
Q |
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| T |
47069186 |
atgttagaagggattactgatatagcaattcctccgtgtccaaattc |
47069232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 127 - 338
Target Start/End: Complemental strand, 47086931 - 47086723
Alignment:
| Q |
127 |
tgcagaagaaacctagatgttaatgtgttggaacctgaggagattattctctctggttgggcttataagtgccttgttgcgggagaggtgaataatcttg |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||| || || | ||||| |||| |
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| T |
47086931 |
tgcagaagaaacctagatgttaatgtgttggaacctgaggagattcttctctctggttgggcttatatttacattgttgcaggcaagctaaataagcttg |
47086832 |
T |
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| Q |
227 |
ttccttgggaagtcattgataataatgtcatggaaaatatggttaaagtggcactttggtgtatccaagatgacccttttctcaggccaacgatgaaggg |
326 |
Q |
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| T |
47086831 |
tcccttgggaagttattgataataatgtcatggaaaatatggttaaggtgaccctttgatgtgtccaa---gaaccttttctcaggccaacaatgaaggg |
47086735 |
T |
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| Q |
327 |
tgtggtgttgat |
338 |
Q |
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|||| ||||||| |
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| T |
47086734 |
tgtgttgttgat |
47086723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 47086596 - 47086556
Alignment:
| Q |
301 |
ccttttctcaggccaacgatgaagggtgtggtgttgatgtt |
341 |
Q |
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| T |
47086596 |
ccttttctcaggccaacaatgaagggtgtgttgttgatgtt |
47086556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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