View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_low_5 (Length: 454)
Name: NF19005_low_5
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 109 - 439
Target Start/End: Original strand, 44634602 - 44634942
Alignment:
| Q |
109 |
gcaaagcatacatacaaaagagatttgagaggagtgagatcaattttttagcaagtgaacttaagaaggattgttaggattcccatataaagtgatgagt |
208 |
Q |
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| T |
44634602 |
gcaaagcatacataaaaaagagatttgagaggagtgagatcaattttttagcaagtgaacttaagaaggattgttaggattcccatataaagtgatgagt |
44634701 |
T |
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| Q |
209 |
ctttgattgactaatttttcgggttat-----------cccttgctggtgggattgttgcgccccacattcagcttccgtctccccttcttggcatgatc |
297 |
Q |
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| T |
44634702 |
ctttgattgtctaatttttcgggttatgcatgataactcccttgctggtgggattgttgcgccccacattcagcttccgtctctccttcttggcatgatc |
44634801 |
T |
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| Q |
298 |
cataaacaagatctttaatacgtaaccttatggaaatcgtgtgttctacctcatttctcaaag-gtcaaacaatggcttgtgaaatggaaggatagagta |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44634802 |
cataaacaagatctttaatacgtaaccttatggaaatcgtgtgttctacctcatttctcaaagtgtcaaacaatggcttgtgaaatggaaggatagagta |
44634901 |
T |
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| Q |
397 |
gttgaggtgggaacctatgtttactgttctgttactatctatc |
439 |
Q |
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| T |
44634902 |
gttgaggtgggaacc--tgtttactgttctgttactatctatc |
44634942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 44634376 - 44634479
Alignment:
| Q |
9 |
gaaatgaagagtgatcaggctaagcacattttgagataaagatgatccaatttagttcaattcaatatatatacatgaaatacattatgaataaaaaagg |
108 |
Q |
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| T |
44634376 |
gaaaagaagagtgatcaggctaagcgcattttgagataaagatgattcaatttagatcaattcaatatatatacatgaaatacattatgaataaaaaagg |
44634475 |
T |
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| Q |
109 |
gcaa |
112 |
Q |
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|||| |
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| T |
44634476 |
gcaa |
44634479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 44398043 - 44398109
Alignment:
| Q |
112 |
aagcatacatacaaaagagatttgagaggagtgagatcaattttttagcaagtgaacttaagaaggattgt |
182 |
Q |
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|||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |
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| T |
44398043 |
aagcatacatacaaaagagatttggaaggagtgagatga----tttagcaagtgaacttaagaaggattgt |
44398109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 44397891 - 44397923
Alignment:
| Q |
73 |
atatatatacatgaaatacattatgaataaaaa |
105 |
Q |
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| T |
44397891 |
atatatatacatgaaatacattatgaaaaaaaa |
44397923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 49128650 - 49128715
Alignment:
| Q |
15 |
aagagtgatcaggctaagcacattttgagataaagatgatccaatttagttcaattcaatatatat |
80 |
Q |
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| T |
49128650 |
aagagggatcaagctaagcatatgttgagataaagatgcaccaatttagttcaattcaatgtatat |
49128715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 49129234 - 49129312
Alignment:
| Q |
112 |
aagcatacatacaaaagagatttgagaggagtgagatcaattttttagcaagtgaacttaagaaggattgttaggattc |
190 |
Q |
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|||||||||| |||||||| || | | ||||||||| || ||||||||||||||||||||||| |||| |||||||| |
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| T |
49129234 |
aagcatacatgtaaaagagagtttaaatgagtgagatgaactttttagcaagtgaacttaagaaacattgctaggattc |
49129312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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