View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_low_6 (Length: 437)
Name: NF19005_low_6
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_6 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 50 - 419
Target Start/End: Original strand, 24318234 - 24318603
Alignment:
| Q |
50 |
ccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaatcatgcccattaaggaaacgatcgaacaaagcccatgctgcatcatgtttc |
149 |
Q |
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|||||| |||||||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||||||| |
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| T |
24318234 |
ccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaatcaagcctattaaggaaatggccgaacaaagcccatgctgcatcatgtttc |
24318333 |
T |
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| Q |
150 |
ttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcgagtgtcatcttacgcatgaggtaccagttgaagtcag |
249 |
Q |
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| T |
24318334 |
ttcaagaactcttgaaaaaacatgtcgacctatctgaagaagaactcatatcactaaccagcgagtgtcatcatacgtatgaggtattggctgaagtcag |
24318433 |
T |
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| Q |
250 |
gtttgatggtgacggatgctttactctatccatcaagataaatggggattatatcggacaatgattgtgtgattcaggagctaatgcttacctaatgagc |
349 |
Q |
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| T |
24318434 |
gtttgatggtgaaggatgctttactctacccatcgagataaatggggatgatatcgaacaaggattgtatgattcaggagcgaatgctaacctaatgagc |
24318533 |
T |
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| Q |
350 |
ttgaacaaaggaagtgagttggtgattaaaaagatatctccttatccttatatgatagagtatgctaatg |
419 |
Q |
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| T |
24318534 |
ttgaccaaggcaagggaattagggattaagaagatatcctcatatccttatacgatagggtatgctaatg |
24318603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 24188093 - 24188243
Alignment:
| Q |
19 |
cagagggaagacaagcaaaagcgagaatgtgccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaatcatgcccattaaggaaacg |
118 |
Q |
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| T |
24188093 |
cagaaggaagacaagcaaaagcgagaatgtgccgccagagttaaatgctttgcataaaattctcaaacagtacaaggtaatcatgcccattaaggaaacg |
24188192 |
T |
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| Q |
119 |
atcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaa |
169 |
Q |
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| T |
24188193 |
atcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaa |
24188243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 17430579 - 17430463
Alignment:
| Q |
95 |
gtaatcatgcccattaaggaaacgatcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaac |
194 |
Q |
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| T |
17430579 |
gtaatcatgccgatcaaggaaatggccgatcaaagtccatgctgcatcaagtttcttcaagaactattgaagattaatgccgatctatccgaggaagaac |
17430480 |
T |
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| Q |
195 |
tcatattactgactagc |
211 |
Q |
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| T |
17430479 |
tcatatcactaactagc |
17430463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 124 - 419
Target Start/End: Complemental strand, 233248 - 232953
Alignment:
| Q |
124 |
acaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcgagtgtcatctt |
223 |
Q |
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|||||| ||||| ||||||| ||||||||||||| | ||||||| ||||||| |||| || ||||||||||| | | ||||||| || ||| | |
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| T |
233248 |
acaaagtccatgttgcatcaagtttcttcaagaattattgaagactgatgccaatctatcggaggaagaactcatgtcaatgactagtgaatgtgagggc |
233149 |
T |
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| Q |
224 |
acgcatgaggtaccagttgaagtcaggtttgatggtgacggatgctttactctatccatcaagataaatggggattatatcggacaatgattgtgtgatt |
323 |
Q |
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| T |
233148 |
acatacgaggtaccggccaaagtcaggttttatggtgaatgatgctttactttacccatcaaggttaatggagaatatatcgggcaaggattatgtgatt |
233049 |
T |
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| Q |
324 |
caggagctaatgcttacctaatgagcttgaacaaaggaagtgagttggtgattaaaaagatatctccttatccttatatgatagagtatgctaatg |
419 |
Q |
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| T |
233048 |
ctggagcaaactctaacctaatgagcttggccaaggcaagggagttgggaaataaaaagatatcatcatatccttatgcaatagagtatgctaatg |
232953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 140 - 419
Target Start/End: Complemental strand, 16228336 - 16228057
Alignment:
| Q |
140 |
atcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcgagtgtcatcttacgcatgaggtaccag |
239 |
Q |
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|||| |||||||||||||| ||||||| |||| | |||| ||||||||||||||||| ||| ||||| || |||||| | | | | | |||| | |
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| T |
16228336 |
atcaagtttcttcaagaacaattgaagaccaatgctgatctatctgaagaagaactcatatcactaactagagaatgtcataacatgtacgggttaccgg |
16228237 |
T |
|
| Q |
240 |
ttgaagtcaggtttgatggtgacggatgctttactctatccatcaagataaatggggattatatcggacaatgattgtgtgattcaggagctaatgctta |
339 |
Q |
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||||||||| || |||||||| |||||||||||||| ||||| ||||| || || |||||||| ||| |||||||||||| |||||| ||||| | |
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| T |
16228236 |
ctgaagtcagattcgatggtgaaagatgctttactctacccatccgcataaagggagaatatatcgggcaaggattgtgtgattaaggagcgaatgccaa |
16228137 |
T |
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| Q |
340 |
cctaatgagcttgaacaaaggaagtgagttggtgattaaaaagatatctccttatccttatatgatagagtatgctaatg |
419 |
Q |
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| T |
16228136 |
ccgaatgagcttgaccaaggcaagggagttaggaaatttgaagatatctccatatccttatacgatagggtatgctaatg |
16228057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 3398954 - 3399117
Alignment:
| Q |
113 |
gaaacgatcgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaagaaacatgccaacctatttgaagaagaactcatattactgactagcg |
212 |
Q |
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|||||| ||||||| | ||||||||||||| |||||||||||| ||||| |||| | |||| || |||| ||| |||||| |||| | ||| |||||| |
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| T |
3398954 |
gaaacggtcgaacagattccatgctgcatcaagtttcttcaagagctcttaaagacaaatgctaatctatctgaggaagaattcatctcactttctagcg |
3399053 |
T |
|
| Q |
213 |
agtgtcatcttacgcatgaggtaccagttgaagtcaggtttgatggtgacggatgctttactct |
276 |
Q |
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| | ||||| ||| | |||||||| | || |||||||||||||||||| || ||||||||||| |
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| T |
3399054 |
aatttcatcacacgtacgaggtaccggctgtagtcaggtttgatggtgaaggttgctttactct |
3399117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 24537233 - 24537175
Alignment:
| Q |
40 |
cgagaatgtgccgccacagttaaatgctttgcatcaaattctcaaacagtacaaggtaa |
98 |
Q |
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|||||| ||||||||| |||| |||| |||||||||||||||||| |||||||| |||| |
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| T |
24537233 |
cgagaacgtgccgccagagttcaatgttttgcatcaaattctcaagcagtacaaagtaa |
24537175 |
T |
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