View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19005_low_8 (Length: 417)
Name: NF19005_low_8
Description: NF19005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19005_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 16357582 - 16357983
Alignment:
| Q |
18 |
agcagttgtagatggagaacttgaattcgactcttgaacattatcaatggaagaaagagttgaaaatgaaacttg------atcttgatcttgatcttcc |
111 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16357582 |
agcagttgtagatggagaacttgaattagactcttgaacattatcaatggaagaaagagttgaaaatgaaacttgatcttgatcttgatcttgatcttcc |
16357681 |
T |
|
| Q |
112 |
ttaatctcctcaaacacaattgctgctgcttttgcagctgcaagttgaatgtccttaggtgatgtagtcgaaggcctcggaagattttgagccaaattag |
211 |
Q |
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|
|||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16357682 |
ttaatctcctcaaatacaatggctgctgcttttgcagctgcaacttgaatgtccttaggtgatgtagtcgaaggcctcggaagattttgagccaaattag |
16357781 |
T |
|
| Q |
212 |
ggaaattgaggtaagctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16357782 |
ggaaattgaggtaagctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattct |
16357881 |
T |
|
| Q |
312 |
tgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacacctctatatgtagggtgttttgtgtcattttcatctctc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16357882 |
tgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacacctctatatgtagggtgttttgtgtcattttcatttctc |
16357981 |
T |
|
| Q |
412 |
tc |
413 |
Q |
| |
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|| |
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|
| T |
16357982 |
tc |
16357983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 335
Target Start/End: Original strand, 505505 - 505630
Alignment:
| Q |
210 |
agggaaattgaggtaagctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatatt |
309 |
Q |
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||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505505 |
agggaaattaaggtatgctgaatgaccctttatagctaaagcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatatt |
505604 |
T |
|
| Q |
310 |
cttgacttctttcttggctcacgaat |
335 |
Q |
| |
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||||| || || ||||||||||||| |
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| T |
505605 |
cttgattttttctttggctcacgaat |
505630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 4268769 - 4268654
Alignment:
| Q |
241 |
atggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcag |
340 |
Q |
| |
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|||| |||||| |||||||| || ||||||||||||||||| | ||| | | ||||||| ||||| |||||||| || || | ||| || || ||||||| |
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| T |
4268769 |
atggttaaagctgctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattttttgcgtggttcgcggatttcag |
4268670 |
T |
|
| Q |
341 |
atacccattttcccca |
356 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
4268669 |
atacccattttcccca |
4268654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 9776593 - 9776648
Alignment:
| Q |
301 |
agccatattcttgacttctttcttggctcacgaatttcagatacccattttcccca |
356 |
Q |
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||||||||||||||||| ||||||||||| | ||| || || |||||||||||||| |
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|
| T |
9776593 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
9776648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 356
Target Start/End: Original strand, 43561786 - 43561916
Alignment:
| Q |
226 |
gctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttg |
325 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| ||| || || | | |
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| T |
43561786 |
gctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgag |
43561885 |
T |
|
| Q |
326 |
gctcacgaatttcagatacccattttcccca |
356 |
Q |
| |
|
| || || ||||| ||||||||||||||||| |
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| T |
43561886 |
gttcgcggatttccgatacccattttcccca |
43561916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 36077744 - 36077813
Alignment:
| Q |
251 |
cagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctt |
320 |
Q |
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||||||||||||| ||| ||||||||||||| | ||||||||| ||||| |||||||||||||| ||||| |
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| T |
36077744 |
cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgatttctt |
36077813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 380
Target Start/End: Complemental strand, 41521801 - 41521670
Alignment:
| Q |
249 |
agcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccat |
348 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||| || || | ||||| ||||| |||||||| || ||||||||||| | ||| || ||||||||| |
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| T |
41521801 |
agcagccacatcatgagctctagcagccatatcaggagttggaaaagttccgagccaaattcttgatttttttcttggctctctaatctctgatacccat |
41521702 |
T |
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| Q |
349 |
tttccccatgctctcattcttacacctctata |
380 |
Q |
| |
|
|| |||||| | ||||||||| |||||||| |
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| T |
41521701 |
ttgccccattgacgcattcttactcctctata |
41521670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 380
Target Start/End: Complemental strand, 33589286 - 33589180
Alignment:
| Q |
274 |
gccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacac |
373 |
Q |
| |
|
||||||||||| |||| |||||||||||||| |||| ||||||| ||| ||||| ||||| ||||||||||||||||||| || |||||| || | |
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| T |
33589286 |
gccatttcagccgtagcatatgttccaagccagattcgacttttctttcgtggttcacggatttcggatacccattttccccatgttcgcattctaactc |
33589187 |
T |
|
| Q |
374 |
ctctata |
380 |
Q |
| |
|
||||||| |
|
|
| T |
33589186 |
ctctata |
33589180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 33602408 - 33602299
Alignment:
| Q |
271 |
gctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattctta |
370 |
Q |
| |
|
|||||||||||||| || | | ||||||| ||||| |||| ||||||| ||| || || |||||||| |||||||||||||||| || |||||||| |
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| T |
33602408 |
gctgccatttcagcggttgcgaatgttcctagccagattcggtttttctttcgtggttctcggatttcagaaacccattttccccatgttcgcattctta |
33602309 |
T |
|
| Q |
371 |
cacctctata |
380 |
Q |
| |
|
|||||||||| |
|
|
| T |
33602308 |
cacctctata |
33602299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 356
Target Start/End: Complemental strand, 51238023 - 51237916
Alignment:
| Q |
249 |
agcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttctt-ggctcacgaatttcagataccca |
347 |
Q |
| |
|
|||||||||||| || |||| |||||||||||| | ||| || |||| || |||||||||| || || |||||| |||||||||||||| || ||||| |
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|
| T |
51238023 |
agcagctacatcgtgtgctcgagctgccatttccggtgtgggaaatgtgccgagccatattcgggattt-tttcttaggctcacgaatttcggacaccca |
51237925 |
T |
|
| Q |
348 |
ttttcccca |
356 |
Q |
| |
|
||||||||| |
|
|
| T |
51237924 |
ttttcccca |
51237916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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