View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_high_10 (Length: 411)
Name: NF19007_high_10
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 31909773 - 31910153
Alignment:
| Q |
13 |
aatattattggttattttcggggggtttcgttctgattttgaatcatgtaagtgaggtttaggtcgtggcattgttaataattattagccatttttgaaa |
112 |
Q |
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| T |
31909773 |
aatattattggttattttcggggggtttcgttctgattttgaatcatgtaagtgaggtttaggtcgtggcattgttaataattattagccatttttgaaa |
31909872 |
T |
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| Q |
113 |
cgttttcattctatcaagtattaaacaggcgggcgagtctagattgaaagaaaaaatggatgtgttcaaagagtggacatctagatgaccatggaaagag |
212 |
Q |
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| T |
31909873 |
cgttttcattctatcaagtattaaacaggcg----agtctagattgaaagaaaaaatggatgtgttcaaagagtggacatctagatgaccatggaaagag |
31909968 |
T |
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| Q |
213 |
aggaaaagaacaaaggagtgtggcactccacaagtggtgtctagaattatgcaagactgtatctgaaaatgagactgaactttactttgaattcatcttg |
312 |
Q |
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| T |
31909969 |
aggaaaagaacaaaggagtgtggcactccacaagtggtgtctagaattatgcaagactgtatctgaaaatgagactgaacttcactttgaattcatcttg |
31910068 |
T |
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| Q |
313 |
catagttttttgctttcgttcacacttaaaattttatcatctgtttctgttgggatttgattcaggtccttgtggatgcataatg |
397 |
Q |
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| T |
31910069 |
catagtttttcgctttcgttcacacttaaaattttatcatctgtttctgttgggatttgattcaggtccttgtggatgcagaatg |
31910153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 31901220 - 31901387
Alignment:
| Q |
84 |
ttgttaataattattagccatttttgaaacgttttcattctatcaagtattaaacaggcgggcgagtctagattgaaagaaaaaatggatgtgttcaaag |
183 |
Q |
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| T |
31901220 |
ttgttaataattattagccttttttgaaatgttttcattctatcaagtattaagcaggtg----agtctagattggaagaaagaatggatgtgttcaagg |
31901315 |
T |
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| Q |
184 |
agtggacatctagatgaccatggaaagagaggaaaagaacaaaggagtgtggcactccacaagtggtgtcta |
255 |
Q |
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| T |
31901316 |
agtggacatctagaagaccatggaaagagaggaaaagaacaaagaagtgtggcactccacaagtggtgtcta |
31901387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 397
Target Start/End: Original strand, 31901517 - 31901617
Alignment:
| Q |
292 |
ctttactttgaattcatcttgcatagttttttgctttcgttcacacttaaaatttt-atcatctgtttctgttgggatttgattcaggtccttgtggatg |
390 |
Q |
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| T |
31901517 |
ctttattttgaattcatcatgcatagttgtttgcttagttttacccttaaaattttgatcatatgtt------gggatttgattcaggtccttgtggatg |
31901610 |
T |
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| Q |
391 |
cataatg |
397 |
Q |
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|| |||| |
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| T |
31901611 |
cagaatg |
31901617 |
T |
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