View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_high_13 (Length: 385)
Name: NF19007_high_13
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_high_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 47333331 - 47333720
Alignment:
| Q |
1 |
tgctccaagtttggatattattggttgtcctaagatattgatttttgttgctgggaatgatgatttaagagacagagggatttggtactatgatgctgtt |
100 |
Q |
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| T |
47333331 |
tgctccaagtttggatattattggttgtcctaagatattgatttttgttgctgggaatgatgatttaagagacagagggatttggtactatgatgctgtt |
47333430 |
T |
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| Q |
101 |
aagaaaagtggttggaaaggtgatgtggaacttgttcatgttgaaggtgaagaacattgttttcagatttatcatcctgaaactcagaattctattgata |
200 |
Q |
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| T |
47333431 |
aagaaaagtggttggaaaggtgatgtggaacttgttcatgttgaaggtgaagaacattgttttcagatttatcatcctgaaactcagagttctattgata |
47333530 |
T |
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| Q |
201 |
tggtcaaacgtattgcttcttttcttgtttgatttgaagagggtcattaggtaattttattgttgatttttgtaataaattggagatggggttgctgaat |
300 |
Q |
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| T |
47333531 |
tggtcaaacgtattgcttcttttcttgtttgatttgaagagggtcattaggtaattttattgttgatttttgtaataaattggagatggggttgctgaat |
47333630 |
T |
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| Q |
301 |
tcatgatcaattttaattatcctgttttgtttat---ggatattcaattcaatgaa--tcatatttttcttttatactgcaatcacgaca |
385 |
Q |
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| T |
47333631 |
tcatgatcaattttaattatcctgttttgtttatatgggatattcaattcaatgaatttcatatttgtcttttatactgcaatcacgaca |
47333720 |
T |
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