View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_high_21 (Length: 348)
Name: NF19007_high_21
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 22360842 - 22361178
Alignment:
| Q |
1 |
atgaagatgaggacgaagttatgagttcctatgttatagagattaactctaacctaagagaggaaaactttggaactgaagctatcgatgaagcgattgc |
100 |
Q |
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| T |
22360842 |
atgaagatgaggacgaagttatgagttcctatgttatagagattaactctaacctaagagaggaaaactttggaactgaagctatcgatgaagcgattgc |
22360941 |
T |
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| Q |
101 |
atgggccaaagagaagtttcaatcgggaactaatgaagaatcggatttaagaaatgatggcggtgtgcaaaatacagaaatggaaggtgattgttttaac |
200 |
Q |
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| T |
22360942 |
atgggccaaagagaagtttcaatcgggaactaatgaagaatcggatttaagaaatgatggcggtgtgcaaaatacagaaatggaaggtgattgttttaac |
22361041 |
T |
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| Q |
201 |
aacacaaatagggaaaaaattgtcttatgaaaattagtgtacaataggtcttttgaaacagacaaatgcagacactttatatttacctctgatcatctat |
300 |
Q |
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| T |
22361042 |
aacacaaatagggaaaaaattgtcttatgcaaattagtgtacaataggtcttttgaaacagacaaatgcagacactttatatttacctctgatcatctat |
22361141 |
T |
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| Q |
301 |
gtaggaatgcctagtgcagacgaataccatgatgatg |
337 |
Q |
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| T |
22361142 |
gcaggaatgcctagtgcagacgaataccatgatgatg |
22361178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 34033740 - 34033700
Alignment:
| Q |
84 |
atcgatgaagcgattgcatgggccaaagagaagtttcaatc |
124 |
Q |
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| T |
34033740 |
atcgatgaagcaattgcatgggccaaagagaagtttcaatc |
34033700 |
T |
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