View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_high_26 (Length: 320)
Name: NF19007_high_26
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 28817249 - 28817546
Alignment:
| Q |
8 |
tagattattctgaaagtatgttcctatcaagaacttttgccatatcttcaacggctttcttgtgatctccttcaaccaaagcagtgtatctcgcagtttc |
107 |
Q |
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| T |
28817249 |
tagattcttctgaaagtatgttcctatcaagaacttttgccatatcttcaacggctttcttgtgatctccttcaaccaaagcagtgtatctcgcagtttc |
28817348 |
T |
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| Q |
108 |
cggcattttcattctccaatagtaagttaatgctgcaggaacagcaccaaacattaacacaattctccaaacgaaatcaccttctggttgagtagataga |
207 |
Q |
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| T |
28817349 |
cggcattttcattctccaatagtaagttaatgctgcaggaacagcaccaaacattaacacaattctccaaacgaaatcaccttctggttgagtggataga |
28817448 |
T |
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| Q |
208 |
acagcatcagtttcaaaatcaggagctggaaagtacaataagaatagtttcgagacaaacatggctacgcctccagcaaccaatattccaactccttg |
305 |
Q |
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| T |
28817449 |
acagcatcagtttcaaaatcaggagctggaaagtacaataagaatagtttcgagacaaacatggctacgcctccagcaaccaatattccaactccttg |
28817546 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 37315589 - 37315675
Alignment:
| Q |
109 |
ggcattttcattctccaatagtaagttaatgctgcaggaacagcaccaaacattaacacaattctccaaacgaaatcaccttctggt |
195 |
Q |
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||||||||||| | ||||||||||||||| | |||||||||||||||||||| | | ||||||||||| ||||| |||||||| |
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| T |
37315589 |
ggcattttcatacgccaatagtaagttaaaccagcaggaacagcaccaaacatgagaatgattctccaaacataatcagcttctggt |
37315675 |
T |
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