View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19007_high_3 (Length: 518)

Name: NF19007_high_3
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19007_high_3
NF19007_high_3
[»] chr5 (14 HSPs)
chr5 (297-498)||(18884404-18884605)
chr5 (219-268)||(16899908-16899957)
chr5 (219-268)||(3099100-3099149)
chr5 (223-268)||(6895211-6895256)
chr5 (219-267)||(19432555-19432603)
chr5 (220-268)||(40366259-40366307)
chr5 (217-276)||(31558235-31558294)
chr5 (218-268)||(32694783-32694833)
chr5 (218-267)||(29096825-29096874)
chr5 (219-268)||(38914287-38914336)
chr5 (223-268)||(39084325-39084370)
chr5 (220-268)||(31559047-31559095)
chr5 (213-268)||(6894343-6894398)
chr5 (222-268)||(3098306-3098352)
[»] chr7 (18 HSPs)
chr7 (213-268)||(41345442-41345497)
chr7 (220-268)||(26828765-26828813)
chr7 (317-452)||(4229840-4229975)
chr7 (219-266)||(26829629-26829676)
chr7 (218-268)||(37796595-37796645)
chr7 (218-268)||(47723489-47723539)
chr7 (218-268)||(6822602-6822652)
chr7 (339-445)||(27803357-27803462)
chr7 (219-272)||(32496999-32497052)
chr7 (220-272)||(789298-789350)
chr7 (220-268)||(34458861-34458909)
chr7 (322-449)||(13962639-13962766)
chr7 (218-268)||(21985589-21985639)
chr7 (223-268)||(14419392-14419437)
chr7 (218-247)||(24699239-24699268)
chr7 (223-256)||(46196761-46196794)
chr7 (319-363)||(11730363-11730407)
chr7 (220-268)||(40193860-40193908)
[»] chr3 (16 HSPs)
chr3 (219-268)||(54280851-54280900)
chr3 (221-268)||(42121749-42121796)
chr3 (215-266)||(53427978-53428029)
chr3 (218-268)||(43631222-43631272)
chr3 (218-264)||(51218102-51218148)
chr3 (401-444)||(1475739-1475782)
chr3 (217-268)||(43655336-43655387)
chr3 (219-268)||(21103615-21103664)
chr3 (220-268)||(43656225-43656273)
chr3 (219-266)||(4125762-4125809)
chr3 (217-268)||(31090670-31090721)
chr3 (221-276)||(53427408-53427463)
chr3 (217-268)||(54295107-54295158)
chr3 (219-265)||(41354792-41354838)
chr3 (223-276)||(34985101-34985154)
chr3 (219-268)||(42489291-42489340)
[»] chr2 (22 HSPs)
chr2 (219-268)||(44075834-44075883)
chr2 (221-268)||(5429808-5429855)
chr2 (219-268)||(2076419-2076468)
chr2 (221-268)||(3834927-3834974)
chr2 (220-274)||(39233936-39233990)
chr2 (219-260)||(27352732-27352773)
chr2 (219-272)||(35907364-35907417)
chr2 (217-268)||(28784828-28784879)
chr2 (214-276)||(28783800-28783862)
chr2 (222-271)||(914381-914430)
chr2 (219-268)||(2075672-2075721)
chr2 (219-268)||(4069607-4069656)
chr2 (219-268)||(5429048-5429097)
chr2 (219-268)||(16011364-16011413)
chr2 (220-268)||(18234190-18234238)
chr2 (319-355)||(40800203-40800239)
chr2 (225-268)||(2215050-2215093)
chr2 (221-268)||(15994492-15994539)
chr2 (221-268)||(39475405-39475452)
chr2 (316-370)||(14441743-14441797)
chr2 (312-401)||(4112612-4112701)
chr2 (212-268)||(25455781-25455837)
[»] chr4 (17 HSPs)
chr4 (220-268)||(572182-572230)
chr4 (218-268)||(6056407-6056457)
chr4 (219-268)||(29145248-29145297)
chr4 (221-269)||(54109499-54109547)
chr4 (226-276)||(11701686-11701736)
chr4 (214-268)||(24573722-24573776)
chr4 (218-272)||(48615227-48615281)
chr4 (218-268)||(54110494-54110544)
chr4 (219-268)||(865414-865463)
chr4 (223-268)||(866283-866328)
chr4 (219-268)||(29144860-29144909)
chr4 (220-268)||(29517845-29517893)
chr4 (319-355)||(53402570-53402606)
chr4 (148-195)||(5844151-5844198)
chr4 (221-268)||(39263627-39263674)
chr4 (222-268)||(48614226-48614272)
chr4 (223-268)||(9170699-9170744)
[»] chr8 (13 HSPs)
chr8 (219-268)||(7601720-7601769)
chr8 (219-272)||(14446057-14446110)
chr8 (223-268)||(40784809-40784854)
chr8 (220-266)||(41723208-41723254)
chr8 (216-268)||(30427076-30427128)
chr8 (218-268)||(40575872-40575922)
chr8 (223-268)||(42093429-42093474)
chr8 (215-267)||(39528858-39528910)
chr8 (221-268)||(11596584-11596631)
chr8 (341-451)||(18838059-18838169)
chr8 (213-272)||(36187189-36187248)
chr8 (218-272)||(30136725-30136779)
chr8 (316-368)||(24072588-24072640)
[»] chr1 (15 HSPs)
chr1 (219-268)||(30856908-30856957)
chr1 (223-268)||(39841278-39841323)
chr1 (213-268)||(1743199-1743254)
chr1 (217-268)||(43380548-43380599)
chr1 (218-268)||(41147289-41147339)
chr1 (214-268)||(51465745-51465799)
chr1 (218-268)||(51466474-51466524)
chr1 (220-268)||(30856097-30856145)
chr1 (213-268)||(16878738-16878793)
chr1 (218-268)||(171451-171501)
chr1 (219-268)||(46047290-46047339)
chr1 (220-272)||(21080375-21080427)
chr1 (317-357)||(21682561-21682601)
chr1 (224-268)||(29373968-29374012)
chr1 (220-268)||(46728727-46728775)
[»] chr6 (5 HSPs)
chr6 (224-268)||(544343-544387)
chr6 (220-272)||(1175110-1175162)
chr6 (221-267)||(1822940-1822986)
chr6 (227-268)||(3184691-3184732)
chr6 (339-371)||(30014786-30014818)
[»] scaffold0002 (1 HSPs)
scaffold0002 (315-363)||(120980-121028)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 297 - 498
Target Start/End: Original strand, 18884404 - 18884605
Alignment:
Q  297 aaggcagttactcgtcttcgcgcctatataagggtgatttcccgtcaccctcaaggtacacttcactcttaccacgttaagcacttaactacctctttca 396  Q
    ||||||||||||| |||||  || ||||||||||| ||||| | ||||||| |||||||||||  || ||||||| || || ||||||| ||||||||||    
T  18884404 aaggcagttactcatcttcatgcatatataagggtcatttcgcatcacccttaaggtacacttttcttttaccacattcagtacttaaccacctctttca 18884503  T
Q  397 aattctgacttgagctttggagtgctagcatgcctgaagacacctttctcctccatagggaagactcggcctccgctgcaccaaagcaccgtggacaact 496  Q
     ||||||| |||||||||||||||||| | |||||| |||||| |||||||||||||||||||||||  | ||| ||||||| ||||||| | |||||||    
T  18884504 gattctgatttgagctttggagtgctaacgtgcctgcagacacatttctcctccatagggaagactcaacatccactgcaccgaagcacccttgacaact 18884603  T
Q  497 gt 498  Q
    ||    
T  18884604 gt 18884605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 16899908 - 16899957
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16899908 aggcttaaatatgataatcgtccctgtaatttggtccagttttgattttc 16899957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 3099149 - 3099100
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  3099149 aggcttaaatatgataatcgtccatgtaatttggtccagttttaattttc 3099100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 6895256 - 6895211
Alignment:
Q  223 ttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||    
T  6895256 ttaaatatgataatcgtccttgtaatttggtccagttttgattttc 6895211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 19432603 - 19432555
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgatttt 267  Q
    ||||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  19432603 aggcttaaatatgataatcgttcctgtaatttggttcagttttgatttt 19432555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 40366259 - 40366307
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  40366259 ggcttaaatatgataatcgtccctgtaatttgggtcagttttgattttc 40366307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 31558235 - 31558294
Alignment:
Q  217 taaggcttaaatatgataatcgtccctataatttggtccagttttgattttcatccatgt 276  Q
    |||||||||||||||||||||||| || |||||||   |||||||||||||| |||||||    
T  31558235 taaggcttaaatatgataatcgtcactgtaatttgagtcagttttgattttcgtccatgt 31558294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 32694833 - 32694783
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||||||||    
T  32694833 aaggcttaaatatgataatcgcccctgtagtttgggccagttttgattttc 32694783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 29096825 - 29096874
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgatttt 267  Q
    |||| |||||||||| |||||||| | |||||||||||||||||||||||    
T  29096825 aaggtttaaatatgaaaatcgtccatgtaatttggtccagttttgatttt 29096874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 38914336 - 38914287
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||  ||||||||||||||| | |||||||||||||||    
T  38914336 aggcttaaatatgattttcgtccctataatttagaccagttttgattttc 38914287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 39084370 - 39084325
Alignment:
Q  223 ttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||    
T  39084370 ttaaatatgataatcgtccctctaatttgggccaattttgattttc 39084325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 31559095 - 31559047
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| || |||||| | |||||||||||||||    
T  31559095 ggcttaaatatgataatcgtcactgtaattttggccagttttgattttc 31559047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 6894343 - 6894398
Alignment:
Q  213 tttttaaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||  |||||||||||||||| ||||| |||||| | |||||||||||||||    
T  6894343 tttttaatacttaaatatgataatcatccctctaatttaggccagttttgattttc 6894398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 3098306 - 3098352
Alignment:
Q  222 cttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||||| |||||| |  ||||||||||||||    
T  3098306 cttaaatatgataatcgtccctgtaatttaggtcagttttgattttc 3098352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 41345497 - 41345442
Alignment:
Q  213 tttttaaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41345497 ttttttaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 41345442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 26828765 - 26828813
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  26828765 ggcttaaatatgataattgtccctgtaatttggtccagttttgattttc 26828813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 452
Target Start/End: Complemental strand, 4229975 - 4229840
Alignment:
Q  317 cgcctatataagggtgatttcccgtcaccctcaaggtacacttcactcttaccacgttaagcacttaactacctctttcaaattctgacttgagctttgg 416  Q
    ||||||||| ||||||||| | | ||||| || |||||||||||||| ||||||| ||  ||||||| | | ||  || | |||||||||||||| || |    
T  4229975 cgcctatattagggtgattccacatcaccttcgaggtacacttcacttttaccacattctgcacttatccatcttatttagattctgacttgagcgttag 4229876  T
Q  417 agtgctagcatgcctgaagacacctttctcctccat 452  Q
    ||||||| | |||||  | |||||||||||||||||    
T  4229875 agtgctaacgtgcctacaaacacctttctcctccat 4229840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 26829676 - 26829629
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattt 266  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  26829676 aggcttaaatatgataatcgtccctgtaatttagtccagttttgattt 26829629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 37796595 - 37796645
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  37796595 aaggcttaaatatgataatcgtccctgtaatttgggtcagttttgattttc 37796645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 47723539 - 47723489
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  47723539 aaggcttaaatatgattttcgtccctataatttggaccagttttgattttc 47723489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 6822602 - 6822652
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||| |||||| |||||||||| ||||||| |||||    
T  6822602 aaggcttaaatatgataattgtccctgtaatttggtcaagttttggttttc 6822652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 445
Target Start/End: Complemental strand, 27803462 - 27803357
Alignment:
Q  339 cgtcaccctcaaggtacacttcactcttaccacgttaagcacttaactacctctttcaaattctgacttgagctttggagtgctagcatgcctgaagaca 438  Q
    ||||||| |||| |||||||||||||  ||||| ||  |||  |||| |||||||||| || ||||||||||| ||||||||||| | |||||| |||||    
T  27803462 cgtcaccttcaatgtacacttcactcc-accactttctgcatataaccacctctttcagatactgacttgagcgttggagtgctaacgtgcctgtagaca 27803364  T
Q  439 cctttct 445  Q
     ||||||    
T  27803363 tctttct 27803357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 32496999 - 32497052
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttcatcc 272  Q
    |||||||||||||||||| || ||| ||||||||  ||||||||||||||||||    
T  32496999 aggcttaaatatgataattgttcctgtaatttgggtcagttttgattttcatcc 32497052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 789298 - 789350
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttcatcc 272  Q
    ||||||||||||||  |||||||| ||||||||  ||||||||||||||||||    
T  789298 ggcttaaatatgattttcgtccctgtaatttgggtcagttttgattttcatcc 789350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 34458909 - 34458861
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||| || |||||||||||| || |||||||||||    
T  34458909 ggcttaaatatgataatcatctctataatttggttcaattttgattttc 34458861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 449
Target Start/End: Complemental strand, 13962766 - 13962639
Alignment:
Q  322 atataagggtgatttcccgtcaccctcaaggtacacttcactcttaccacgttaagcacttaactacctctttcaaattctgacttgagctttggagtgc 421  Q
    |||||| ||||||| | |||||||||||| |||||||| ||| ||||||| ||  |||| |||  ||||||||||  | ||||||||||  ||  ||||     
T  13962766 atataaaggtgattacgcgtcaccctcaaagtacactttacttttaccactttctgcacgtaatcacctctttcagttactgacttgagtgttaaagtgt 13962667  T
Q  422 tagcatgcctgaagacacctttctcctc 449  Q
    || | | |||| ||||||||||||||||    
T  13962666 taacgttcctggagacacctttctcctc 13962639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 21985639 - 21985589
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||  |||||||| |||||||| || ||||||||||||    
T  21985639 aaggcttaaatatgattttcgtccctgtaatttggacccgttttgattttc 21985589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 14419392 - 14419437
Alignment:
Q  223 ttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| || |||||  ||||||||||||||    
T  14419392 ttaaatatgataatcgtccctgtattttggggcagttttgattttc 14419437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 24699239 - 24699268
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataa 247  Q
    ||||||||||||||||||||||||||||||    
T  24699239 aaggcttaaatatgataatcgtccctataa 24699268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 46196794 - 46196761
Alignment:
Q  223 ttaaatatgataatcgtccctataatttggtcca 256  Q
    ||||||||||||||||||||| ||||||||||||    
T  46196794 ttaaatatgataatcgtccctgtaatttggtcca 46196761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 11730363 - 11730407
Alignment:
Q  319 cctatataagggtgatttcccgtcaccctcaaggtacacttcact 363  Q
    ||||||||||||||||| | | |||||||||||||||| ||||||    
T  11730363 cctatataagggtgattcctcatcaccctcaaggtacaattcact 11730407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 40193860 - 40193908
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| || ||||||||  || |||||||||||    
T  40193860 ggcttaaatatgataatcgtcgctgtaatttgggtcaattttgattttc 40193908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 54280851 - 54280900
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54280851 aggcttaaatatgataatcgtccctgtaatttggtccagttttgattttc 54280900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 42121796 - 42121749
Alignment:
Q  221 gcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  42121796 gcttaaatatgataatcgtccctataatttggaccagttttaattttc 42121749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 53428029 - 53427978
Alignment:
Q  215 tttaaggcttaaatatgataatcgtccctataatttggtccagttttgattt 266  Q
    |||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  53428029 tttaaggcttaaatatgataatcgtttctgtaatttggtccagttttgattt 53427978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 43631272 - 43631222
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  43631272 aaggcttaaatatgataatcgtccatgtgatttggtccagttttgattttc 43631222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 51218102 - 51218148
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgat 264  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||    
T  51218102 aaggtttaaatatgataattgtccctataatttggtccagttttgat 51218148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 444
Target Start/End: Complemental strand, 1475782 - 1475739
Alignment:
Q  401 ctgacttgagctttggagtgctagcatgcctgaagacacctttc 444  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  1475782 ctgacttgagcgttggagtgctagcatgcctgcagacacctttc 1475739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 43655336 - 43655387
Alignment:
Q  217 taaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| ||| | |||||||| |||||||||||||||    
T  43655336 taaggcttaaatatgataatcatccatttaatttgggccagttttgattttc 43655387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 21103664 - 21103615
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||  |||||||| |||||||| |||||||||||||||    
T  21103664 aggcttaaatatgattttcgtccctgtaatttggaccagttttgattttc 21103615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 43656273 - 43656225
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||||| | ||||||||  ||||||||||||||    
T  43656273 ggcttaaatatgataatcgtccttgtaatttgggacagttttgattttc 43656225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 4125809 - 4125762
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattt 266  Q
    ||||||||||||||||||||||| |||||||||| ||| |||| ||||    
T  4125809 aggcttaaatatgataatcgtccatataatttgggccaattttaattt 4125762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 31090670 - 31090721
Alignment:
Q  217 taaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||  |||||||| |||||||| || ||||||||||||    
T  31090670 taaggcttaaatatgattttcgtccctgtaatttggacccgttttgattttc 31090721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 53427408 - 53427463
Alignment:
Q  221 gcttaaatatgataatcgtccctataatttggtccagttttgattttcatccatgt 276  Q
    |||||||||||||| |||| ||| |||||| || ||||||||||||||||| ||||    
T  53427408 gcttaaatatgatagtcgttcctgtaatttagttcagttttgattttcatctatgt 53427463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 54295158 - 54295107
Alignment:
Q  217 taaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||| |||||||||||||||||||| | ||||||||  ||||||||||||||    
T  54295158 taagacttaaatatgataatcgtccatgtaatttgggtcagttttgattttc 54295107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 41354838 - 41354792
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgatt 265  Q
    ||||||||||||||||||||| | | || ||||||||||||||||||    
T  41354838 aggcttaaatatgataatcgttcatgtactttggtccagttttgatt 41354792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 34985101 - 34985154
Alignment:
Q  223 ttaaatatgataatcgtccctataatttggtccagttttgattttcatccatgt 276  Q
    |||||||| |||||||||  | |||||||||||| ||||||||||| |||||||    
T  34985101 ttaaatataataatcgtctgtgtaatttggtccaattttgattttcgtccatgt 34985154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 42489340 - 42489291
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||| |||| | ||||||||  ||||||||||||||    
T  42489340 aggcttaaatatgataattgtccttgtaatttgggtcagttttgattttc 42489291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 44075834 - 44075883
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44075834 aggcttaaatatgataatcgtccctgtaatttggtccagttttgattttc 44075883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 5429855 - 5429808
Alignment:
Q  221 gcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  5429855 gcttaaatatgataatcgtccctataatttggtccaattttgattttc 5429808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 2076468 - 2076419
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  2076468 aggctttaatatgataattgtccctataatttggtccagttttgattttc 2076419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 3834927 - 3834974
Alignment:
Q  221 gcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  3834927 gcttaaatatgataatcgtccctgtaatttggtctagttttgattttc 3834974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 39233990 - 39233936
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttcatccat 274  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||| |||||    
T  39233990 ggcttaaatatgataatcgtccctgtaatttggttcaattttgattttcgtccat 39233936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 27352773 - 27352732
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttt 260  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  27352773 aggcttaaatatgataatcgtccctataatttgatccagttt 27352732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 35907364 - 35907417
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttcatcc 272  Q
    |||||| ||||||||||| |||||| |||||||||| |||||||||||||||||    
T  35907364 aggcttcaatatgataattgtccctgtaatttggtctagttttgattttcatcc 35907417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 28784879 - 28784828
Alignment:
Q  217 taaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||| ||||||||| || |||||||||| |||||||||||||    
T  28784879 taaggcttaaatattataatcgtctctgtaatttggtcaagttttgattttc 28784828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 28783800 - 28783862
Alignment:
Q  214 ttttaaggcttaaatatgataatcgtccctataatttggtccagttttgattttcatccatgt 276  Q
    |||| ||||||||||||||||||||||| | |||||| ||||| |||| |||||| |||||||    
T  28783800 tttttaggcttaaatatgataatcgtccatgtaatttagtccaattttaattttcgtccatgt 28783862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 914381 - 914430
Alignment:
Q  222 cttaaatatgataatcgtccctataatttggtccagttttgattttcatc 271  Q
    |||||||||||||||||||||| |||||| |  |||||||||||||||||    
T  914381 cttaaatatgataatcgtccctgtaatttaggtcagttttgattttcatc 914430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 2075672 - 2075721
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||||| |||||| |  ||||||||||||||    
T  2075672 aggcttaaatatgataatcgtccctgtaatttaggtcagttttgattttc 2075721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 4069607 - 4069656
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||| |||||||||||||||  ||||||| ||||||    
T  4069607 aggcttaaatatgataattgtccctataatttgggtcagttttaattttc 4069656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 5429048 - 5429097
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||| ||| |||||| ||||||||| ||||||||||||||    
T  5429048 aggcttaaatatgaaaattgtccctgtaatttggttcagttttgattttc 5429097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 16011364 - 16011413
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| | | |||||| |||||||||||||||||    
T  16011364 aggcttaaatatgataatcgttcttgtaatttagtccagttttgattttc 16011413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 18234190 - 18234238
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||| ||||| || |||||||| |||||||||||||||    
T  18234190 ggcttaaatatgatattcgtctctgtaatttggaccagttttgattttc 18234238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 40800239 - 40800203
Alignment:
Q  319 cctatataagggtgatttcccgtcaccctcaaggtac 355  Q
    ||||||||||||||||||| |||||||||||||||||    
T  40800239 cctatataagggtgatttcgcgtcaccctcaaggtac 40800203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 2215093 - 2215050
Alignment:
Q  225 aaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||| |||||||||||| |||||||| |||||||||||||||    
T  2215093 aaatataataatcgtccctgtaatttgggccagttttgattttc 2215050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 15994539 - 15994492
Alignment:
Q  221 gcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| |||||||||   ||||||||||||||    
T  15994539 gcttaaatatgataatcgtccatataatttgagtcagttttgattttc 15994492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 39475405 - 39475452
Alignment:
Q  221 gcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||| ||||||||| || ||||||| ||||||||||||||||    
T  39475405 gcttaaatataataatcgtctctgtaatttgatccagttttgattttc 39475452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 14441797 - 14441743
Alignment:
Q  316 gcgcctatataagggtgatttcccgtcaccctcaaggtacacttcactcttacca 370  Q
    ||||||||||||||| ||||   |||||||||| |||||||||||||| ||||||    
T  14441797 gcgcctatataagggagattgagcgtcaccctcgaggtacacttcacttttacca 14441743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 4112612 - 4112701
Alignment:
Q  312 cttcgcgcctatataagggtgatttcccgtcaccctcaaggtacacttcactcttaccacgttaagcacttaactacctctttcaaattc 401  Q
    |||||| ||||||||||| |||||   |  |||||||||| ||||||||||| ||||||| ||  |||||||||| | ||||||| ||||    
T  4112612 cttcgcacctatataaggttgattcagcaccaccctcaagatacacttcacttttaccacattttgcacttaactgcttctttcagattc 4112701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 25455781 - 25455837
Alignment:
Q  212 atttttaaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||| |||||| |||||||||||||||||  |||||||| |||||| ||| ||||    
T  25455781 attttttaggctttaatatgataatcgtccccgtaatttgggccagttatgaatttc 25455837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 572230 - 572182
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  572230 ggcttaaatatgataattgtccctataatttggtccagttttgattttc 572182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 6056407 - 6056457
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  6056407 aaggcttaaatatgataatcgtccctataatttagggcagttttgattttc 6056457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 29145297 - 29145248
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||||| |||||||||| | |||||||||||    
T  29145297 aggcttaaatatgataatcgtccctgtaatttggtcaaattttgattttc 29145248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 54109499 - 54109547
Alignment:
Q  221 gcttaaatatgataatcgtccctataatttggtccagttttgattttca 269  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  54109499 gcttaaatatgataatcgtccctgtaatttactccagttttgattttca 54109547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 11701736 - 11701686
Alignment:
Q  226 aatatgataatcgtccctataatttggtccagttttgattttcatccatgt 276  Q
    ||||| |||||||||||| |||||||| ||||||||||||||| |||||||    
T  11701736 aatattataatcgtccctgtaatttggaccagttttgattttcgtccatgt 11701686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 24573722 - 24573776
Alignment:
Q  214 ttttaaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||| ||||||||||||||||  ||| || ||||||||||||||||||||||||    
T  24573722 ttttatggcttaaatatgataactgtctctgtaatttggtccagttttgattttc 24573776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 48615281 - 48615227
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttcatcc 272  Q
    ||||||||||||||||| |||||| | |||||||| | |||||||||||||||||    
T  48615281 aaggcttaaatatgatattcgtccatgtaatttggacgagttttgattttcatcc 48615227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 54110544 - 54110494
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||| ||||||||||||||||||||| ||||||| | ||||||||||||||    
T  54110544 aaggtttaaatatgataatcgtccctgtaatttgtttcagttttgattttc 54110494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 865414 - 865463
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  865414 aggcttaaatatgataatcatccctgtaatttgggtcagttttgattttc 865463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 866328 - 866283
Alignment:
Q  223 ttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||    
T  866328 ttaaatatgataatcgtccctgtaatttagtctagttttgattttc 866283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 29144909 - 29144860
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||||| ||||||| || | |||||||||||    
T  29144909 aggcttaaatatgataatcgtccctgtaatttgatcaaattttgattttc 29144860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 29517893 - 29517845
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||| |||||||||||||||||| ||||||||| || |||||||||||    
T  29517893 ggctttaatatgataatcgtccctgtaatttggttcaattttgattttc 29517845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 53402606 - 53402570
Alignment:
Q  319 cctatataagggtgatttcccgtcaccctcaaggtac 355  Q
    ||||||||||||||||||| |||||||||||||||||    
T  53402606 cctatataagggtgatttcgcgtcaccctcaaggtac 53402570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 5844151 - 5844198
Alignment:
Q  148 tctttattacatttaatttggttgtcgtgtgtttgggtgatttgaaaa 195  Q
    ||||| ||||||||||||| ||| || |||||||||||||||||||||    
T  5844151 tctttgttacatttaattttgttttcatgtgtttgggtgatttgaaaa 5844198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 39263627 - 39263674
Alignment:
Q  221 gcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||  |||||||| |||||||| |||||||||||||||    
T  39263627 gcttaaatatgattttcgtccctgtaatttggaccagttttgattttc 39263674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 48614226 - 48614272
Alignment:
Q  222 cttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||| | ||| ||||||||||||| ||||||    
T  48614226 cttaaatatgataatcgtccgtgtaaattggtccagttttaattttc 48614272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 9170744 - 9170699
Alignment:
Q  223 ttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||| | | || |||||||||||||||||||||    
T  9170744 ttaaatatgataatcgttcttgtattttggtccagttttgattttc 9170699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 7601769 - 7601720
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  7601769 aggcttaaatatgataatcgtccctgtaatttgggccagttttgattttc 7601720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 14446110 - 14446057
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttcatcc 272  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  14446110 aggcttaaatatgataatcgtccctgtaatttgggccaattttgattttcatcc 14446057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 40784809 - 40784854
Alignment:
Q  223 ttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  40784809 ttaaatatgataatcgtccctgtaatttggtccagttttgattttc 40784854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 41723208 - 41723254
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattt 266  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||    
T  41723208 ggcttaaatatgataatcgtccctgtaatttggtcaagttttgattt 41723254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 30427076 - 30427128
Alignment:
Q  216 ttaaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  30427076 ttaaagcttaaatatgataatcgtccctgtaatttggttcagtttttattttc 30427128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 40575922 - 40575872
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||| |||||||||||||| ||||||||||| |||||| ||||||||    
T  40575922 aaggcttagatatgataatcgtctctataatttggaccagttatgattttc 40575872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 42093429 - 42093474
Alignment:
Q  223 ttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| |||||||  |||||||||||||||    
T  42093429 ttaaatatgataatcgtccctgtaatttgaaccagttttgattttc 42093474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 39528858 - 39528910
Alignment:
Q  215 tttaaggcttaaatatgataatcgtccctataatttggtccagttttgatttt 267  Q
    |||||||||||||||||||  |||||||| ||||||||  |||||||||||||    
T  39528858 tttaaggcttaaatatgattttcgtccctgtaatttgggtcagttttgatttt 39528910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 11596631 - 11596584
Alignment:
Q  221 gcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||| |||||||||  |||||||| |||||||||||||||    
T  11596631 gcttaaatatgagaatcgtcccagtaatttggaccagttttgattttc 11596584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 451
Target Start/End: Complemental strand, 18838169 - 18838059
Alignment:
Q  341 tcaccctcaaggtacacttcactcttaccacgttaagcacttaactacctctttcaaattctgacttgagctttggagtgctagcatgcctg-aagacac 439  Q
    |||||||||||||||||| |||| ||||||  ||  |||| ||||||||||| | | || ||||||||||| ||| |||| || | |||||| |||| ||    
T  18838169 tcaccctcaaggtacactgcacttttaccaattttcgcacataactacctctattagatactgacttgagcgttgaagtgttaccgtgcctgcaaga-ac 18838071  T
Q  440 ctttctcctcca 451  Q
    ||||||||||||    
T  18838070 ctttctcctcca 18838059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 36187248 - 36187189
Alignment:
Q  213 tttttaaggcttaaatatgataatcgtccctataatttggtccagttttgattttcatcc 272  Q
    ||||| |||||||||||||||  |||||||| |||||| |  ||||||||||||||||||    
T  36187248 ttttttaggcttaaatatgattttcgtccctgtaatttagatcagttttgattttcatcc 36187189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 30136779 - 30136725
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttcatcc 272  Q
    |||||||||||||||||||||||| | |||||||  ||| |||||||||| ||||    
T  30136779 aaggcttaaatatgataatcgtccatgtaatttgaaccaattttgatttttatcc 30136725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 24072640 - 24072588
Alignment:
Q  316 gcgcctatataagggtgatttcccgtcaccctcaaggtacacttcactcttac 368  Q
    |||||||||||||||||| |   | ||||||||||||||||||||||| ||||    
T  24072640 gcgcctatataagggtgactcagcatcaccctcaaggtacacttcacttttac 24072588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 30856957 - 30856908
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  30856957 aggcttaaatatgataatcttccctataatttggtctagttttgattttc 30856908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 39841323 - 39841278
Alignment:
Q  223 ttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  39841323 ttaaatatgataatcgtccctgtaatttggtccagttttgattttc 39841278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 1743199 - 1743254
Alignment:
Q  213 tttttaaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||| ||| |||||||||||||||||||||||||||| || ||||||||||||||    
T  1743199 ttttttaggtttaaatatgataatcgtccctataatttagttcagttttgattttc 1743254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 43380599 - 43380548
Alignment:
Q  217 taaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  43380599 taaggcttaaatatgataatcgtccctgtaatttggatcagttttgattttc 43380548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 41147339 - 41147289
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||||||    
T  41147339 aaggcttaaatatgataatcgtccttgtaatttgggccagttttgattttc 41147289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 51465745 - 51465799
Alignment:
Q  214 ttttaaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||| |||||| ||||||||  ||||||||||||||    
T  51465745 ttttaaggcttaaatatgataatagtccctgtaatttggatcagttttgattttc 51465799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 51466524 - 51466474
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||||||| |||||||| |  ||||||||||||||    
T  51466524 aaggcttaaatatgataatcgtccttataatttaggtcagttttgattttc 51466474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 30856097 - 30856145
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||| |||||||||||| |||||||||| |||||||| ||||||    
T  30856097 ggcttaaatttgataatcgtccttataatttgggccagttttaattttc 30856145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 16878738 - 16878793
Alignment:
Q  213 tttttaaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||||||  |||||||| |||||||  || ||||||||||||    
T  16878738 tttttaaggcttaaatatgattttcgtccctgtaatttgaacccgttttgattttc 16878793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 171501 - 171451
Alignment:
Q  218 aaggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||| || |||||||   ||||||||||||||    
T  171501 aaggcttaaatatgataatcgtctctgtaatttgagtcagttttgattttc 171451  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 46047339 - 46047290
Alignment:
Q  219 aggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||||| | |||||| ||||| |||| ||||||    
T  46047339 aggcttaaatatgataatcgtccatgtaatttagtccaattttaattttc 46047290  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 21080375 - 21080427
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttcatcc 272  Q
    ||||||||||||||  |||||||| ||||||||  | ||||||||||||||||    
T  21080375 ggcttaaatatgattttcgtccctgtaatttgggtccgttttgattttcatcc 21080427  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 21682561 - 21682601
Alignment:
Q  317 cgcctatataagggtgatttcccgtcaccctcaaggtacac 357  Q
    ||||||||||||||||| ||  |||||||||||||||||||    
T  21682561 cgcctatataagggtgaatttgcgtcaccctcaaggtacac 21682601  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 29374012 - 29373968
Alignment:
Q  224 taaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    |||||||||||||||||| | ||||||||  ||||||||||||||    
T  29374012 taaatatgataatcgtccttgtaatttggatcagttttgattttc 29373968  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 46728775 - 46728727
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||||||| || || |||||  ||||||||||||||    
T  46728775 ggcttaaatatgataatcgtcactgtagtttgggtcagttttgattttc 46728727  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 544343 - 544387
Alignment:
Q  224 taaatatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  544343 taaatatgataatcgtctctgtaatttggtccagttttgattttc 544387  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 1175162 - 1175110
Alignment:
Q  220 ggcttaaatatgataatcgtccctataatttggtccagttttgattttcatcc 272  Q
    ||||||||||||||  |||||||| |||||||| || ||||||||||||||||    
T  1175162 ggcttaaatatgattttcgtccctgtaatttggacccgttttgattttcatcc 1175110  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 1822940 - 1822986
Alignment:
Q  221 gcttaaatatgataatcgtccctataatttggtccagttttgatttt 267  Q
    |||||||||||||||| |||  | |||||||||||||||||||||||    
T  1822940 gcttaaatatgataattgtctttgtaatttggtccagttttgatttt 1822986  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 3184691 - 3184732
Alignment:
Q  227 atatgataatcgtccctataatttggtccagttttgattttc 268  Q
    ||||||||||||||||| |||||||| | |||||||||||||    
T  3184691 atatgataatcgtccctgtaatttggacaagttttgattttc 3184732  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 371
Target Start/End: Complemental strand, 30014818 - 30014786
Alignment:
Q  339 cgtcaccctcaaggtacacttcactcttaccac 371  Q
    ||||||||||||||||||||||||| |||||||    
T  30014818 cgtcaccctcaaggtacacttcactattaccac 30014786  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 120980 - 121028
Alignment:
Q  315 cgcgcctatataagggtgatttcccgtcaccctcaaggtacacttcact 363  Q
    ||||||||||||||||||| ||  | ||||||||||||||||| |||||    
T  120980 cgcgcctatataagggtgaatttgcttcaccctcaaggtacacatcact 121028  T

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