View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_high_30 (Length: 267)
Name: NF19007_high_30
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_high_30 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 52593728 - 52593480
Alignment:
| Q |
19 |
atgattggcgcttaaatttaccaattatttattcctttttaccaataaataactagcagtagtagttggtgttaagcaagtaaaggagttaatattattt |
118 |
Q |
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| T |
52593728 |
atgattggcgcttaaatttaccaattatttattcctttttaccaataaataactagcagtagtagttggtgttaagcaagtaaaggagttaatattattt |
52593629 |
T |
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| Q |
119 |
aattggttggtaccgttcttccaatgataaggtggtcggtctttctttttgtttgaaattaaaaacatatactctctgttgttggagttgccatttgtct |
218 |
Q |
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| T |
52593628 |
aattggttggtaccgttcttccaatgataaggtggtcggtctttctttttgtttgaaattaaaaacatatactctctgttgttggagttgccatttgtct |
52593529 |
T |
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| Q |
219 |
ctccttccttcttcaaactggattcataattctctattgcacctctgct |
267 |
Q |
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| T |
52593528 |
ctccttccttcttcaaactggattcataattctctattgcacctctgct |
52593480 |
T |
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