View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_high_4 (Length: 484)
Name: NF19007_high_4
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 18799569 - 18799445
Alignment:
| Q |
18 |
gtattagagtatgtcaacaatctactattgtaatgatagtttagttagaattagttaaccgtagttagtctaataatttgatctctattacaattaatct |
117 |
Q |
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| T |
18799569 |
gtattagagtatgtcaacaatctactattgtaatgatagtttatttagaattagttaaccgtagttagtctaataatttgatctctattacaattaatct |
18799470 |
T |
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| Q |
118 |
tgtattgactttgtacatattactt |
142 |
Q |
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| T |
18799469 |
tgtattgactttgtacatattactt |
18799445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 213 - 372
Target Start/End: Complemental strand, 18798265 - 18798106
Alignment:
| Q |
213 |
ttaatgtgacagtttcaaagaaaataatcgtattgtgctaaaccaaaaattttaataatcaacaattaaatttaaatgattaacgaactctatcaaaaga |
312 |
Q |
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| T |
18798265 |
ttaatgtgacagtttcaaagaaaataatcgtattgtcctaaaccaaatattttaataatcaacaattaagtttaaataattaacaagctc-atcgaaaga |
18798167 |
T |
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| Q |
313 |
aagatggtttgaaagaattcgaattcatttctaaattccaca-ttttttgttagactatac |
372 |
Q |
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| T |
18798166 |
aagatcgtttgaaagaattcgaattcatttttaaatttcacatttttttgtcagactatac |
18798106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 18798374 - 18798304
Alignment:
| Q |
141 |
ttaattaatcagaagttcctaaatattgttttactttctaaaattctggataactagtcagcacaagtctt |
211 |
Q |
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| T |
18798374 |
ttaattaatcagaagttcctaaatattgttttactttctaaaattctcgatagctagtcagcacaagtctt |
18798304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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