View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19007_high_43 (Length: 237)
Name: NF19007_high_43
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_high_43 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 39270178 - 39270382
Alignment:
| Q |
19 |
atgtgaccataataataatgtatctatatgagtttcatgttttttgccataataaataattagaattaaatgttgatgtaatatatgtttggctattaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39270178 |
atgtgaccataataataatgtatctatatgagtttcatgttttttgccataataaataattagaattaaatgttgatgtaatatatgtttggctattaat |
39270277 |
T |
|
| Q |
119 |
gttgcattgcattttctctttatatttaataataatatcctcttcttctttgttgtaaactcctctactcctcaattaacaagaaacaaattaatttaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39270278 |
gttgcattgcattttctctttatatttaataataatatcctcttcttctttgttgtaaactcctctactcctcaattaacaagaaacaaattaattgaga |
39270377 |
T |
|
| Q |
219 |
attat |
223 |
Q |
| |
|
||||| |
|
|
| T |
39270378 |
attat |
39270382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University