View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_high_44 (Length: 234)
Name: NF19007_high_44
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_high_44 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 45159549 - 45159734
Alignment:
| Q |
21 |
tttccatcgacataggccaaattaaaaatatggaccaaaaaacaactctcttcgataagaaatgtaaaagacaaacatgtcacattaatatattattttg |
120 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45159549 |
tttccatcgacataggtcaaattaaaaatatggaccaaaaaacaactctcttcgataagaaatgtaaaagacaaacatgtcacattggtatattattttg |
45159648 |
T |
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| Q |
121 |
tgaggaagaggaatttaagccccctactctatataaaaagttggattttaatcaggaagttctaaaaagtgagttaggtgctctct |
206 |
Q |
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| T |
45159649 |
tgaggaataggaatttaagccccctactctatataaaaagttggattttaatcaggaagttctaaaaagtgagtttggtgctctct |
45159734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 21238261 - 21238324
Alignment:
| Q |
21 |
tttccatcgacataggccaaattaaaaatatggaccaaaaaacaactctcttcgataagaaatg |
84 |
Q |
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| T |
21238261 |
tttccatcaacatataccaaattaaaaacatggatcaaaaaacaattctctttggtaagaaatg |
21238324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 28610845 - 28610904
Alignment:
| Q |
24 |
ccatcgacataggccaaattaaaaatatggaccaaaaaacaactctcttcgataagaaat |
83 |
Q |
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| T |
28610845 |
ccatcaacatagaccaaattaaaaatatggaccaaaaaacaattctcttcgataagaaat |
28610904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 6267121 - 6267179
Alignment:
| Q |
30 |
acataggccaaattaaaaatatggaccaaaaaacaactctcttcgataagaaatgtaaa |
88 |
Q |
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|||||| |||| ||||||| ||||||||||| |||| |||||||||||||||| ||||| |
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| T |
6267121 |
acatagaccaacttaaaaacatggaccaaaacacaaatctcttcgataagaaacgtaaa |
6267179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 54273873 - 54273814
Alignment:
| Q |
31 |
cataggccaaattaaaaatatggaccaaaaaacaactctcttcgataagaaatgtaaaag |
90 |
Q |
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| T |
54273873 |
catagaccaaattaaaaatatggaccaaaaagcaattttcttcggtaagaaatgcaaaag |
54273814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 9058399 - 9058453
Alignment:
| Q |
24 |
ccatcgacataggccaaattaaaaatatggaccaaaaaacaactctcttcgataa |
78 |
Q |
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||||| ||||| |||||||||||| |||||||||||| ||||||||||||||| |
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| T |
9058399 |
ccatcaacataaaccaaattaaaaacatggaccaaaaagtaactctcttcgataa |
9058453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 1681358 - 1681408
Alignment:
| Q |
39 |
aaattaaaaatatggaccaaaaaacaactctcttcgataagaaatgtaaaa |
89 |
Q |
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|||||||||| |||||||||||||||| |||||| ||||||||||| |||| |
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| T |
1681358 |
aaattaaaaacatggaccaaaaaacaattctctttgataagaaatgcaaaa |
1681408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 6367702 - 6367634
Alignment:
| Q |
21 |
tttccatcgacataggccaaattaaaaatatggaccaaaaaacaactctcttcgataagaaatgtaaaa |
89 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||||| ||||| |||||||||||| |||||||| |||| |
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| T |
6367702 |
tttccatcaacatagaacaaattaaaaacatggactaaaaatcaactctcttcggcaagaaatgcaaaa |
6367634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 35688282 - 35688214
Alignment:
| Q |
23 |
tccatcgacataggccaaattaaaaatatggaccaaaaaacaactctcttcgat-aagaaatgtaaaag |
90 |
Q |
| |
|
|||||| |||||| |||||||||||| |||| ||||||||||| |||||| ||| || ||||||||||| |
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| T |
35688282 |
tccatcaacatagaccaaattaaaaacatgggccaaaaaacaattctctttgataaaaaaatgtaaaag |
35688214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 7860242 - 7860209
Alignment:
| Q |
39 |
aaattaaaaatatggaccaaaaaacaactctctt |
72 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
7860242 |
aaattaaaaatatggacaaaaaaacaactctctt |
7860209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 32646481 - 32646537
Alignment:
| Q |
21 |
tttccatcgacataggccaaattaaaaatatggaccaaaaaacaactctcttcgata |
77 |
Q |
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|
|||||||| |||||| ||||||||||| |||||| |||||||||| |||||||||| |
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| T |
32646481 |
tttccatcaacatagatcaaattaaaaacatggacaaaaaaacaaccctcttcgata |
32646537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 40398449 - 40398383
Alignment:
| Q |
25 |
catcgacataggccaaattaaaaatatggaccaaaaaacaactctcttcgataagaaatgtaaaaga |
91 |
Q |
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|||| |||||| | |||||| ||| |||||||||||| | ||||||||| |||||||||| |||||| |
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| T |
40398449 |
catcaacatagactaaattacaaacatggaccaaaaaccgactctcttcaataagaaatgcaaaaga |
40398383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 17775 - 17718
Alignment:
| Q |
38 |
caaattaaaaatatggaccaaaaaacaactctcttcgataagaaatgtaaaagacaaa |
95 |
Q |
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||||||||||| || ||| |||||| |||||||||| ||||||||| |||||||||| |
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| T |
17775 |
caaattaaaaacatagacaaaaaaataactctcttcactaagaaatgcaaaagacaaa |
17718 |
T |
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