View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_high_48 (Length: 213)
Name: NF19007_high_48
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 6954136 - 6953939
Alignment:
| Q |
1 |
tgctaacctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6954136 |
tgctaacctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttg |
6954037 |
T |
|
| Q |
101 |
aggctttccttcaactatattcaaagaagctccaaaaatttctgatatgatcaacacaaaagctagcatccaaaacctcattgaaaacattatctgtg |
198 |
Q |
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| T |
6954036 |
aggctttccttcaactatattcaaagaagctccaaaaatttctgatatgatcaacacaaaagctagcatccaaaacctcattgaaaacattatctgtg |
6953939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 6963692 - 6963492
Alignment:
| Q |
1 |
tgctaacctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttg |
100 |
Q |
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|||||||||||||| |||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6963692 |
tgctaacctctaattgaaattctaatctattgagcttcaaaagatatagcaatgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttg |
6963593 |
T |
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| Q |
101 |
aggctttccttcaactatattcaaagaagctccaaaaatttctgatat-----gatcaacacaaaagctagcatccaaaacctcattgaaaacattatct |
195 |
Q |
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| T |
6963592 |
aggctttccttcaactatattcaaagaagctccaaaaatttctgatatgatctgatcaacacaaaagctagcatccaaaacctcattgaaaacattctct |
6963493 |
T |
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| Q |
196 |
g |
196 |
Q |
| |
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| |
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| T |
6963492 |
g |
6963492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 18134631 - 18134710
Alignment:
| Q |
30 |
ttgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcc |
109 |
Q |
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|||||||| | |||||| || || |||||||||||||||||||||||||| ||||||| || ||| | |||||||||||| |
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| T |
18134631 |
ttgagcttaagaagataaagcagagcaaataaatcatcagtatcaacatcagtatccacaacaattcgttgaggctttcc |
18134710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 49121840 - 49121919
Alignment:
| Q |
30 |
ttgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcc |
109 |
Q |
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| T |
49121840 |
ttgagcttaagaagataaagcagagcaaataaatcatcagtatcaacatcagtatccacaacaattcgttgaggctttcc |
49121919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 49105241 - 49105320
Alignment:
| Q |
6 |
acctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatc |
85 |
Q |
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||||||||| |||||||||| |||||||||| | ||| || || || ||||||||||| || ||| ||||||||||||| |
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| T |
49105241 |
acctctaattgaaactctgaagtattgagcttgagaaggtagagtagagcaaataaatcgtcggtagcaacatctgtatc |
49105320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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