View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19007_high_6 (Length: 438)

Name: NF19007_high_6
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19007_high_6
NF19007_high_6
[»] chr6 (3 HSPs)
chr6 (6-168)||(22053009-22053170)
chr6 (240-318)||(22053245-22053317)
chr6 (9-40)||(22052971-22053002)
[»] chr2 (3 HSPs)
chr2 (6-168)||(44363394-44363555)
chr2 (240-318)||(44363630-44363702)
chr2 (9-40)||(44363356-44363387)
[»] chr8 (4 HSPs)
chr8 (1-179)||(24924398-24924581)
chr8 (4-127)||(31387078-31387213)
chr8 (240-315)||(31386891-31386965)
chr8 (254-313)||(1086556-1086616)
[»] chr3 (4 HSPs)
chr3 (6-179)||(13822758-13822935)
chr3 (240-309)||(13822995-13823064)
chr3 (1-90)||(4264644-4264733)
chr3 (240-316)||(4264441-4264517)
[»] chr1 (14 HSPs)
chr1 (5-175)||(17224295-17224466)
chr1 (1-100)||(25871893-25871992)
chr1 (240-313)||(17224158-17224231)
chr1 (1-100)||(19151744-19151843)
chr1 (1-100)||(23678800-23678899)
chr1 (240-314)||(25871695-25871769)
chr1 (240-315)||(19151977-19152052)
chr1 (240-313)||(23679036-23679109)
chr1 (115-173)||(25871838-25871895)
chr1 (122-171)||(19151847-19151897)
chr1 (122-171)||(23678903-23678953)
chr1 (1-41)||(19151661-19151702)
chr1 (1-41)||(23678717-23678758)
chr1 (240-300)||(38245596-38245656)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-133)||(86386-86519)
[»] chr7 (6 HSPs)
chr7 (55-179)||(12103324-12103444)
chr7 (240-303)||(12103200-12103263)
chr7 (240-313)||(41546039-41546112)
chr7 (1-70)||(41546242-41546310)
chr7 (122-171)||(41546192-41546242)
chr7 (1-41)||(41546352-41546393)
[»] chr4 (7 HSPs)
chr4 (5-92)||(14056006-14056094)
chr4 (240-314)||(14056230-14056304)
chr4 (240-315)||(55039335-55039410)
chr4 (1-70)||(55039540-55039608)
chr4 (1-43)||(14055961-14056003)
chr4 (122-171)||(55039490-55039540)
chr4 (1-41)||(55039650-55039691)
[»] chr5 (1 HSPs)
chr5 (265-305)||(1501226-1501266)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 22053009 - 22053170
Alignment:
Q  6 gcggctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggtgtggcggaatgaatggtggtggcagaatgaaggggg 105  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||    
T  22053009 gcggctagggttgaacggaagatggagcaggagacggcaactagggttgaacggaatgaagggtggggcggaa-gaatggttgtggcggaatgaaggggg 22053107  T
Q  106 gaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagg 168  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  22053108 gaatggatggaactagggtgaagaaagagaaattttccaccaaatgaattgaaatgagagagg 22053170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 22053245 - 22053317
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctttaa 318  Q
    ||||||||||||||||||||| |||||||||||||||||      || ||||||||||||| |||||||||||| ||||    
T  22053245 attattaattgtattgccacataaaggtggtataaggtg------catctatggtggtatatctatcactgctcattaa 22053317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 22052971 - 22053002
Alignment:
Q  9 gctagggttgaacggaagatggagcaggagac 40  Q
    ||||||||||||||||||||||||||||||||    
T  22052971 gctagggttgaacggaagatggagcaggagac 22053002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 44363394 - 44363555
Alignment:
Q  6 gcggctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggtgtggcggaatgaatggtggtggcagaatgaaggggg 105  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||    
T  44363394 gcggctagggttgaacggaagatggagcaggagacggcaactagggttgaacggaatgaagggtggggcggaa-gaatggttgtggcggaatgaaggggg 44363492  T
Q  106 gaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagg 168  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  44363493 gaatggatggaactagggtgaagaaagagaaattttccaccaaatgaattgaaatgagagagg 44363555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 44363630 - 44363702
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctttaa 318  Q
    ||||||||||||||||||||| |||||||||||||||||      || ||||||||||||| |||||||||||| ||||    
T  44363630 attattaattgtattgccacataaaggtggtataaggtg------catctatggtggtatatctatcactgctcattaa 44363702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 44363356 - 44363387
Alignment:
Q  9 gctagggttgaacggaagatggagcaggagac 40  Q
    ||||||||||||||||||||||||||||||||    
T  44363356 gctagggttgaacggaagatggagcaggagac 44363387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 24924398 - 24924581
Alignment:
Q  1 gcggcgcggctagggttgaacggaagatggagcaggagacgacag-----ctagggttgaacggaatgaagggtgtggcggaatgaatggtggtggcaga 95  Q
    ||||| ||||||||||| ||||||||||||||||||||||| | |     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24924398 gcggcacggctagggttcaacggaagatggagcaggagacggcggtgcggctagggttgaacggaatgaagggtgtggcggaatgaatggtggtggcaga 24924497  T
Q  96 atgaaggggggaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacggctaaa 179  Q
     |||| || |||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| ||||| ||||    
T  24924498 gtgaatggtggaatgaatggaactagggtgaagaaagagaaattttccaacaaatgaattgaaatgagagaggatacggttaaa 24924581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 31387213 - 31387078
Alignment:
Q  4 gcgcggctagggttgaacggaagatggagcaggagacg--------------acagctagggttgaacggaatgaagggtgtggcggaatgaatggtggt 89  Q
    ||||||||||||||||||||||||||||||||||||||               | |||| ||||||||||||||||||||||| ||||||||||||||||    
T  31387213 gcgcggctagggttgaacggaagatggagcaggagacggcggccgacggcgtgcggctaaggttgaacggaatgaagggtgtgccggaatgaatggtggt 31387114  T
Q  90 ggcagaatgaaggggggaatggatggaactagggtgaa 127  Q
    ||| |||||||  |||||||||||||||| ||||||||    
T  31387113 ggcggaatgaa--ggggaatggatggaacaagggtgaa 31387078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 31386965 - 31386891
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctt 315  Q
    |||||||||| ||| |||||| ||  |||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  31386965 attattaattttat-gccacataagagtggtataaggtgtgttgccacctatggtggtacacctatcactgctctt 31386891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 1086556 - 1086616
Alignment:
Q  254 tgccacacaaaggtggtataaggtg-tattaccacctatggtggtatacctatcactgctc 313  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||| || |||||||||||    
T  1086556 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgctc 1086616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 13822758 - 13822935
Alignment:
Q  6 gcggctagggttgaacggaagatggagcaggagacgaca-------gctagggttgaacggaatgaagggtgtggcggaatgaatggtggtggcagaatg 98  Q
    ||||||||||||||| |||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13822758 gcggctagggttgaatggaagatggagcaggagacggcgacgcgcggctagggttgaacggaatgaagggtgtggcggaatgaatggtggtggcggaatg 13822857  T
Q  99 aaggggggaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacggctaaa 179  Q
    ||||||||||||||||||||||||||   |||||| |||| ||||||||||||||||||||||| | ||||||||||||||    
T  13822858 aaggggggaatggatggaactagggt---gaaagagaaatgttccaccgaatgaattgaaatgataaagggtacggctaaa 13822935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 13822995 - 13823064
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcact 309  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||    
T  13822995 attattaattgtattgccacataagggtggtataaggtgtattgccacctatggtggtatacctatcact 13823064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4264733 - 4264644
Alignment:
Q  1 gcggcgcggctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggt-gtggcggaatgaatggtggtg 90  Q
    |||||||||||||||||||| |||||||||| ||||||||| | |||||||||||| |||||||| ||| ||||| |||||||||||||||    
T  4264733 gcggcgcggctagggttgaatggaagatggatcaggagacggcggctagggttgaa-ggaatgaatggtggtggctgaatgaatggtggtg 4264644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 4264517 - 4264441
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctcttt 316  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  4264517 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctcttt 4264441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 17224466 - 17224295
Alignment:
Q  5 cgcggctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggtgtggcggaatgaatggtggtggcagaatgaagggg 104  Q
    ||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||| ||     
T  17224466 cgcggctagggttgaacggaagatggagcgggagacggcggctagggttgaacggaatgaagggtggggcggaatgaatggtggtggaggaatgaatggt 17224367  T
Q  105 ggaat-ggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacggc 175  Q
    ||  | |||  ||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||    
T  17224366 ggtgtcggaatgaactagggtgaagaaagagaaattttctatcaaatgaattgaaatgagagagggtacggc 17224295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 25871992 - 25871893
Alignment:
Q  1 gcggcgcggctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggtgtggcggaatgaatggtggtggcagaatgaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||| | ||||||||||||||||||| |||||||    
T  25871992 gcggcgaggctagggttgaacggaagatggagcaggagacgacgactagggttgaacagaatgaagggtgggacggaatgaatggtggtggcggaatgaa 25871893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 17224231 - 17224158
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctc 313  Q
    ||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  17224231 attattatttgtgttgccacacaaaggtggtataaggtgtattgccacctatggtggtacacctatcactgctc 17224158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19151744 - 19151843
Alignment:
Q  1 gcggcgcggctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggt-gtggcggaatgaatggtggtggcagaatga 99  Q
    |||||||||||||||||||| |||||||||| ||||||||| | |||||||||||| |||||||| ||| ||||| ||||||||||||| ||| ||||||    
T  19151744 gcggcgcggctagggttgaatggaagatggatcaggagacggcggctagggttgaa-ggaatgaatggtggtggctgaatgaatggtggcggcggaatga 19151842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 23678800 - 23678899
Alignment:
Q  1 gcggcgcggctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggt-gtggcggaatgaatggtggtggcagaatga 99  Q
    |||||||||||||||||||| |||||||||| ||||||||| | |||||||||||| |||||||| ||| ||||| ||||||||||||| ||| ||||||    
T  23678800 gcggcgcggctagggttgaatggaagatggatcaggagacggcggctagggttgaa-ggaatgaatggtggtggctgaatgaatggtggcggcggaatga 23678898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 25871769 - 25871695
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctct 314  Q
    ||||||| |||| |||||||| || |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  25871769 attattatttgtgttgccacaaaagggtggtataaggtgtattgccacctatggtggtacacctatcactgctct 25871695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 19151977 - 19152052
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctt 315  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  19151977 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctctt 19152052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 23679036 - 23679109
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctc 313  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  23679036 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctc 23679109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 25871895 - 25871838
Alignment:
Q  115 gaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacg 173  Q
    ||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||    
T  25871895 gaactagggtgaagaaagagaaaatttccaccaaatgaattg-aatgagagagggtacg 25871838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 19151847 - 19151897
Alignment:
Q  122 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 171  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  19151847 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 19151897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 23678903 - 23678953
Alignment:
Q  122 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 171  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  23678903 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 23678953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19151661 - 19151702
Alignment:
Q  1 gcggcgcg-gctagggttgaacggaagatggagcaggagacg 41  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  19151661 gcggcgcgcgctagggttgaatggaagatggagcaggagacg 19151702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23678717 - 23678758
Alignment:
Q  1 gcggcgcg-gctagggttgaacggaagatggagcaggagacg 41  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  23678717 gcggcgcgcgctagggttgaatggaagatggagcaggagacg 23678758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 38245596 - 38245656
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtata 300  Q
    |||||||||  ||||||||||||| ||||||| |||||||||| |||  || |||||||||    
T  38245596 attattaatgatattgccacacaagggtggtacaaggtgtattgccatgtacggtggtata 38245656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 86519 - 86386
Alignment:
Q  1 gcggcgcg-gctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggt-gtggcggaatgaatggtggtggcagaatg 98  Q
    |||||||| |||||||| |||||||||||| ||||||||||||| |||||||||||||  |||||| ||| ||||||||||||||||||||||  |||||    
T  86519 gcggcgcgtgctagggtcgaacggaagatgaagcaggagacgacggctagggttgaacaaaatgaatggtggtggcggaatgaatggtggtggtggaatg 86420  T
Q  99 aaggggggaatggatggaactagggtgaagaaaga 133  Q
    || ||||||||||||||||||||||||||||||||    
T  86419 aa-gggggaatggatggaactagggtgaagaaaga 86386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 12103444 - 12103324
Alignment:
Q  55 aacggaatgaagggtgtggcggaatgaatggtggtggcagaatgaaggggggaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaat 154  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||   |||||| ||| ||| ||| ||||||||    
T  12103444 aacggaatgaagggtgtggcggaatgaatggtggtggcggaatgaag-ggggaatgaatggaactagggt---gaaagagaaaattttcactgaatgaat 12103349  T
Q  155 tgaaatgagagagggtacggctaaa 179  Q
    |||||||||||||||||||||||||    
T  12103348 tgaaatgagagagggtacggctaaa 12103324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 12103263 - 12103200
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacct 303  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  12103263 attattaattgtattgccacacaagggtggtataaggtgtattgccacctatggtggtatacct 12103200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 41546112 - 41546039
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctc 313  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  41546112 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctc 41546039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41546310 - 41546242
Alignment:
Q  1 gcggcgcggctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggtg 70  Q
    |||||||||||||||||||| |||||||||| ||||||||| | |||||||||||| |||||||| ||||    
T  41546310 gcggcgcggctagggttgaatggaagatggatcaggagacggcggctagggttgaa-ggaatgaatggtg 41546242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 41546242 - 41546192
Alignment:
Q  122 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 171  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  41546242 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 41546192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41546393 - 41546352
Alignment:
Q  1 gcggcgcg-gctagggttgaacggaagatggagcaggagacg 41  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  41546393 gcggcgcgcgctagggttgaatggaagatggagcaggagacg 41546352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 14056006 - 14056094
Alignment:
Q  5 cgcggctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggt-gtggcggaatgaatggtggtggc 92  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||||||||  ||||||||    
T  14056006 cgcggctagggttggacggaagatggagcaggagacggcggctagggttgaacggaatgaatggtggtggcggaatgaacagtggtggc 14056094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 14056230 - 14056304
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctct 314  Q
    ||||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  14056230 attattatttgtgttgccacacaagggtggtataaggtgtattgccacctatggtggtacacctatcactgctct 14056304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 55039410 - 55039335
Alignment:
Q  240 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctt 315  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  55039410 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctctt 55039335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 55039608 - 55039540
Alignment:
Q  1 gcggcgcggctagggttgaacggaagatggagcaggagacgacagctagggttgaacggaatgaagggtg 70  Q
    |||||||||||||||||||| |||||||||| ||||||||| | |||||||||||| |||||||| ||||    
T  55039608 gcggcgcggctagggttgaatggaagatggatcaggagacggcggctagggttgaa-ggaatgaatggtg 55039540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14055961 - 14056003
Alignment:
Q  1 gcggcgcggctagggttgaacggaagatggagcaggagacgac 43  Q
    |||||||||||| |||||||||||||||||||||  |||||||    
T  14055961 gcggcgcggctacggttgaacggaagatggagcaaaagacgac 14056003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 55039540 - 55039490
Alignment:
Q  122 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 171  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  55039540 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 55039490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 55039691 - 55039650
Alignment:
Q  1 gcggcgcg-gctagggttgaacggaagatggagcaggagacg 41  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  55039691 gcggcgcgcgctagggttgaatggaagatggagcaggagacg 55039650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 1501226 - 1501266
Alignment:
Q  265 ggtggtataaggtgtattaccacctatggtggtatacctat 305  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  1501226 ggtggtagaaggtgtattgccacctatggtggtatacctat 1501266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University