View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19007_low_12 (Length: 389)
Name: NF19007_low_12
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 34549595 - 34549969
Alignment:
| Q |
1 |
taataacttcgttacatcagttgagaaatttaaccacattaactaacccttgtgatagctatagtgatgattaacgcacttgtttcatatacattgatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34549595 |
taataacttcgttacatcagttgagaaatttaaccacattaactaacccttgtgatagctataatgatgattaacgca-ttgtttcatatacattgatgg |
34549693 |
T |
|
| Q |
101 |
atatccccacccaacttaattgatggttccttcgcagaaaagaccttgagtttggtaggtatggaatcaaagcaggggtagagtggttttgtgaatgagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34549694 |
atatccccacccaacttaattgatggttccttcgcagaaaacaccttgagtttggtaggtatggaatcaaagcaggggtagagtggtttagtgaatgagt |
34549793 |
T |
|
| Q |
201 |
ctgaaatttgtaagacctaggaacatgcaaaataatgagttgtttggcaattactctttcttaaacaaaatggatgtcaaattcaatgtgctttgggtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34549794 |
ctgaaatttgtaagacctaggaacatgcaacataacaagttgtttggcaattactctttcttaaacaaaatggatgtcaaattcaatgtgctttgggtga |
34549893 |
T |
|
| Q |
301 |
ggggc-----acagcactttaattatcacaagggttagggtatgcatcaaggctcaaagagtgtttacagagttac |
371 |
Q |
| |
|
||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34549894 |
gggccgggccacaacactttaattatcacaagggttagggtaggcatcaaggctcaaagagtgtttacagagttac |
34549969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University