View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_13 (Length: 387)
Name: NF19007_low_13
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 37220531 - 37220681
Alignment:
| Q |
22 |
atttatcgacgtccgttacaaacctttaaaagaccactcgctcaacagaaaaaatccactcagtcacttaaatgtgattactgattaggattatagagta |
121 |
Q |
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| T |
37220531 |
atttatcgacg-ccgttacaaacctttaaaaaaccattcgctcaacagaaaaagtccactcaatcacttaaatgtgattactgattagggttatagagta |
37220629 |
T |
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| Q |
122 |
tggagttttgtaggattaattgatacatagacacaagaaaatttataatttt |
173 |
Q |
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| T |
37220630 |
tggagttttgtaggattaattgatacatagacacaagaaaatttataatttt |
37220681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 213 - 324
Target Start/End: Original strand, 37220723 - 37220834
Alignment:
| Q |
213 |
gatataacaatgtgtttattgtgttttgtttttgttcctcgtaaatttgaaccgcgcctcataattcgagcaaccactaacatttcaatttcgatttttc |
312 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37220723 |
gatataacaatgtgtttattgtgttttgcttttgttcctcgtaaatttgaaccgcgcctcataattcgagcaaccactagcatttcaatttcgatttttc |
37220822 |
T |
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| Q |
313 |
ttaccaatacac |
324 |
Q |
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| T |
37220823 |
ttaccaatacac |
37220834 |
T |
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