View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_15 (Length: 382)
Name: NF19007_low_15
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 4242481 - 4242170
Alignment:
| Q |
20 |
ggcccctctttttcttgattgaaccagatccagatgaagcaccaacacatggcttcaaggtggaaggaccaatgccattgttgaaaggatcaataaaatg |
119 |
Q |
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| T |
4242481 |
ggcccctctttttcttgattgaaccagatccagatgaagcaccaacacatggcttcaaggtggaaggaccaaagccattgttgaacgaatcaaaaaaagg |
4242382 |
T |
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| Q |
120 |
ggaagggttactctccatgttgagaatagggaattgagttgtggcaagttccatcatggtggttggtacatagtttgcgagtggattgggggcaacattt |
219 |
Q |
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| T |
4242381 |
ggaagggttactctccatgttgagaatagggaattgagttgtggcaagttccatcatggtggttggtacatactttgcgagtggattgggggcaacattt |
4242282 |
T |
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| Q |
220 |
tcaggttgaaggtggtgtgggtgagggtgtggtggttctagttcatgtgaatccatgacaatggagtgaagaaaaaagtgattgaaaaaagactatgaat |
319 |
Q |
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| T |
4242281 |
tcaggttgaaggtggtgtgggtgagggtgtggtggttctagttcatgtgaatccatgacaatgcagt---gaaaatagtgattgaaaaaagactatgaat |
4242185 |
T |
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| Q |
320 |
gaatggatatatata |
334 |
Q |
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| T |
4242184 |
gaatagatatatata |
4242170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 4249626 - 4249489
Alignment:
| Q |
25 |
ctctttttcttgattgaaccagatccagatgaagcaccaacacatggcttcaaggtggaaggaccaatgccattgttgaaaggatcaataaaatgggaag |
124 |
Q |
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| T |
4249626 |
ctctttttcttgatcgaaccatatccagatgaagtaccaacacctggcttcaaggtgggaggatcagtgttgttgttgaaaggctcaaaaagaggggacg |
4249527 |
T |
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| Q |
125 |
ggttactctccatgttgagaatagggaattgagttgtg |
162 |
Q |
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| T |
4249526 |
ggttaacgtccatgttgagaatagggaattgagttgtg |
4249489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 4242142 - 4242094
Alignment:
| Q |
326 |
atatatatagagatgaaagtaacataaagttgtgaatggtgtgatgatg |
374 |
Q |
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| T |
4242142 |
atatatatatagatgaaagtaacataaagttgtgaatggtgtgatgatg |
4242094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 14419176 - 14419251
Alignment:
| Q |
212 |
caacattttcaggttgaaggtggtgtgggtgagggtgtggtggttctagttcatgtgaatccatgacaatggagtg |
287 |
Q |
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| T |
14419176 |
caacattttccaattgaaggtggtgtgggcgaggatgtggttgttgtagttcatgagaatccatgaaaatgtagtg |
14419251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 14418983 - 14419073
Alignment:
| Q |
22 |
cccctctttttcttgattgaaccagatccagatgaagcaccaacacatggcttcaaggtggaaggaccaatgccattgttgaaaggatcaa |
112 |
Q |
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| T |
14418983 |
cccctttttttctgaattgaaccagatccagaggaagcacccacacattgtttcagggtagaaggaacaatgttgttgttgaaaggctcaa |
14419073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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